Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0646
         (696 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     25   0.78 
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    25   0.78 
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           25   0.78 
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    25   0.78 
AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory recept...    24   1.0  
AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory recept...    24   1.0  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   3.2  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    22   4.2  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   7.3  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   7.3  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   9.6  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   9.6  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    21   9.6  

>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 24.6 bits (51), Expect = 0.78
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
 Frame = -1

Query: 582 SG*GVIPEFP---QHSSNEYSPPSSGMFSN 502
           SG  V P+FP   +++ N Y PP    F N
Sbjct: 23  SGVVVDPKFPPSEEYNQNSYIPPGGDFFGN 52


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 24.6 bits (51), Expect = 0.78
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
 Frame = -1

Query: 582 SG*GVIPEFP---QHSSNEYSPPSSGMFSN 502
           SG  V P+FP   +++ N Y PP    F N
Sbjct: 23  SGVVVDPKFPPSEEYNQNSYIPPGGDFFGN 52


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 24.6 bits (51), Expect = 0.78
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
 Frame = -1

Query: 582 SG*GVIPEFP---QHSSNEYSPPSSGMFSN 502
           SG  V P+FP   +++ N Y PP    F N
Sbjct: 23  SGVVVDPKFPPSEEYNQNSYIPPGGDFFGN 52


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 24.6 bits (51), Expect = 0.78
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
 Frame = -1

Query: 582 SG*GVIPEFP---QHSSNEYSPPSSGMFSN 502
           SG  V P+FP   +++ N Y PP    F N
Sbjct: 23  SGVVVDPKFPPSEEYNQNSYIPPGGDFFGN 52


>AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory receptor
           candidate 56 protein.
          Length = 358

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 89  QKFFTHILKCCSVIF 133
           ++ F+ +L CCSVIF
Sbjct: 92  EEVFSSLLSCCSVIF 106


>AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory receptor
           candidate 21 protein.
          Length = 386

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 89  QKFFTHILKCCSVIF 133
           ++ F+ +L CCSVIF
Sbjct: 92  EEVFSSLLSCCSVIF 106


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -3

Query: 406 HEQQTFHYTNTV 371
           H QQT HYTN +
Sbjct: 497 HMQQTQHYTNII 508


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = -1

Query: 549 HSSNEYSPPSSGMFSNFLAPGLGPL 475
           H SN  +P S   F      G GPL
Sbjct: 13  HESNTSTPVSKSAFIELQQHGYGPL 37


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 315 TLLHCDAPHLEIQMHRV 265
           T+  CDA +LEI+  R+
Sbjct: 775 TVCTCDAKYLEIKCKRI 791


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 9/34 (26%), Positives = 14/34 (41%)
 Frame = -2

Query: 584 VLDKE*FRNFHSIRVMSTHLHPLVCSATSWHQDW 483
           +LDK  F  +     M  + +P     T W+  W
Sbjct: 647 ILDKFFFPRWRQTLAMWLNHNPNYAEVTDWYTGW 680


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -2

Query: 572 E*FRNFHSIRVMST 531
           E  R FH IR MST
Sbjct: 380 ELLRRFHEIRYMST 393


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +2

Query: 95  FFTHILKCCSVIF 133
           F  H+L CC+ IF
Sbjct: 176 FTMHLLFCCAFIF 188


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -1

Query: 381 PTLCRAARRGVGPAMTGSRLTTTLL 307
           P L    RRG GPA +   L   L+
Sbjct: 322 PQLAGGGRRGPGPARSRRHLPAHLV 346


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,359
Number of Sequences: 336
Number of extensions: 3772
Number of successful extensions: 13
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18322480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)