Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0646
         (696 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024853-4|AAK68586.1|  746|Caenorhabditis elegans Hypothetical ...    29   3.2  
Z73899-11|CAA98082.2| 7158|Caenorhabditis elegans Hypothetical p...    28   7.3  
Z73899-10|CAA98081.2| 6839|Caenorhabditis elegans Hypothetical p...    28   7.3  
Z73897-5|CAA98065.2| 7158|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z73897-4|CAA98064.2| 6839|Caenorhabditis elegans Hypothetical pr...    28   7.3  
U70853-1|AAB09143.2|  439|Caenorhabditis elegans Hypothetical pr...    27   9.7  

>AC024853-4|AAK68586.1|  746|Caenorhabditis elegans Hypothetical
           protein Y71F9AR.3 protein.
          Length = 746

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/28 (53%), Positives = 16/28 (57%)
 Frame = -1

Query: 567 IPEFPQHSSNEYSPPSSGMFSNFLAPGL 484
           +P  P  S  E SPPSS  FSN  AP L
Sbjct: 190 LPSTP--SEREASPPSSSQFSNSAAPNL 215


>Z73899-11|CAA98082.2| 7158|Caenorhabditis elegans Hypothetical
           protein ZK617.1b protein.
          Length = 7158

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +2

Query: 476 RGPSPGAKKLLNIPEDGGEYSLLECCGNSGITP 574
           RGPS   K  + IP+DGG   ++EC   S  TP
Sbjct: 109 RGPSFVGKPRI-IPKDGGALIVMECKVKSASTP 140


>Z73899-10|CAA98081.2| 6839|Caenorhabditis elegans Hypothetical
           protein ZK617.1a protein.
          Length = 6839

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +2

Query: 476 RGPSPGAKKLLNIPEDGGEYSLLECCGNSGITP 574
           RGPS   K  + IP+DGG   ++EC   S  TP
Sbjct: 109 RGPSFVGKPRI-IPKDGGALIVMECKVKSASTP 140


>Z73897-5|CAA98065.2| 7158|Caenorhabditis elegans Hypothetical
           protein ZK617.1b protein.
          Length = 7158

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +2

Query: 476 RGPSPGAKKLLNIPEDGGEYSLLECCGNSGITP 574
           RGPS   K  + IP+DGG   ++EC   S  TP
Sbjct: 109 RGPSFVGKPRI-IPKDGGALIVMECKVKSASTP 140


>Z73897-4|CAA98064.2| 6839|Caenorhabditis elegans Hypothetical
           protein ZK617.1a protein.
          Length = 6839

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +2

Query: 476 RGPSPGAKKLLNIPEDGGEYSLLECCGNSGITP 574
           RGPS   K  + IP+DGG   ++EC   S  TP
Sbjct: 109 RGPSFVGKPRI-IPKDGGALIVMECKVKSASTP 140


>U70853-1|AAB09143.2|  439|Caenorhabditis elegans Hypothetical
           protein M01H9.2 protein.
          Length = 439

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = -1

Query: 564 PEFPQHSSNEYSPPSSGMFSNFLAPGLGPLTADSALCSVSLIG 436
           P++P    N  +P    +   FL PG   L   S    ++L+G
Sbjct: 240 PQYPDEKLNTIAPNPMQLVEPFLTPGQNDLNPKSMSSLINLLG 282


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,432,491
Number of Sequences: 27780
Number of extensions: 358110
Number of successful extensions: 920
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 920
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)