Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0644
         (571 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF080562-1|AAC31942.1|  327|Anopheles gambiae Ultrabithorax home...    28   0.19 
AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein ...    27   0.43 
AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcript...    25   1.3  
AF080563-1|AAC31943.1|  310|Anopheles gambiae Ultrabithorax home...    24   4.0  
AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcript...    24   4.0  
AJ301655-1|CAC35008.1| 1433|Anopheles gambiae putative epidermal...    23   5.3  
AF510715-1|AAP47144.1|  470|Anopheles gambiae Rh-like glycoprote...    23   5.3  

>AF080562-1|AAC31942.1|  327|Anopheles gambiae Ultrabithorax
           homeotic protein IIa protein.
          Length = 327

 Score = 28.3 bits (60), Expect = 0.19
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 8/75 (10%)
 Frame = +2

Query: 113 YSKEIAGTRTEQRVKMN----RGRQRIAQ----RLKDAQNTNAMLTTFNEIDMSHIMAFR 268
           YS+ +AGT     +  N    RGRQ   +     L+   +TN  LT    I+M+H +   
Sbjct: 217 YSESLAGTLLPDWIGANGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLT 276

Query: 269 KKHLDTFTKKHSIKL 313
           ++ +  + +   +KL
Sbjct: 277 ERQIKIWFQNRRMKL 291


>AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein L5
           protein.
          Length = 327

 Score = 27.1 bits (57), Expect = 0.43
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +3

Query: 225 RHSTRSTCPTSWHSVRSTSTP 287
           R  +RST PTSW   R TS P
Sbjct: 277 RRRSRSTRPTSWPRSRPTSKP 297


>AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1154

 Score = 25.4 bits (53), Expect = 1.3
 Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
 Frame = +1

Query: 352 PDGPARGERCY--RRKRDNL*GLRRYFGSGRHTERSRRAGHQKR 477
           PD P   +  Y  RR R     ++R   +GR  +  RR  H+ +
Sbjct: 532 PDSPRLSDAQYGFRRGRSTFSAIQRVVDAGRRAKSFRRTNHRDK 575


>AF080563-1|AAC31943.1|  310|Anopheles gambiae Ultrabithorax
           homeotic protein IVa protein.
          Length = 310

 Score = 23.8 bits (49), Expect = 4.0
 Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
 Frame = +2

Query: 164 RGRQRIAQ----RLKDAQNTNAMLTTFNEIDMSHIMAFRKKHLDTFTKKHSIKL 313
           RGRQ   +     L+   +TN  LT    I+M+H +   ++ +  + +   +KL
Sbjct: 221 RGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKL 274


>AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcriptase
            protein.
          Length = 973

 Score = 23.8 bits (49), Expect = 4.0
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
 Frame = -1

Query: 520  PAMVSSNISISHVL----NVSDDRHDETFRCG 437
            PA VS   S  HVL      +++RH+ T +CG
Sbjct: 909  PACVSIVESTEHVLFHCPRFAEERHEITVKCG 940


>AJ301655-1|CAC35008.1| 1433|Anopheles gambiae putative epidermal
            growth factor receptorprotein.
          Length = 1433

 Score = 23.4 bits (48), Expect = 5.3
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +2

Query: 377  AVIEENEIIYRDYVDISVAVATPKGLVVPV 466
            A +EE  +++RD    +V V TP  + + V
Sbjct: 948  AYLEERRLVHRDLAARNVLVQTPSCVKITV 977


>AF510715-1|AAP47144.1|  470|Anopheles gambiae Rh-like glycoprotein
           protein.
          Length = 470

 Score = 23.4 bits (48), Expect = 5.3
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -1

Query: 145 LGARAGDLFAVVLWRNFNSCCLD 77
           + A  G +F  + W +FNS  +D
Sbjct: 218 ISAMIGTIFLWIFWPSFNSALVD 240


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 566,762
Number of Sequences: 2352
Number of extensions: 10658
Number of successful extensions: 23
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 53824896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)