Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0644
         (571 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          25   0.70 
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    23   2.1  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    23   2.8  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    23   2.8  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    22   4.9  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   8.6  

>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 24.6 bits (51), Expect = 0.70
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = +1

Query: 4   RAEFGTRRCSH--LLNTSRRHPSRSGDRDSNC*SSSTGLQQRDRRHAHRATGQ 156
           ++E  T+ C    + + S R  SRS  R S+C S    L+  D R+++R  G+
Sbjct: 199 KSENETKTCKKYAISSNSLRSRSRSFQRTSSCHSRYEDLRHED-RNSYRNDGE 250


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 481 LNVSDDRHDETFRCGDRYRNI 419
           L+ SDD H+   R G + RNI
Sbjct: 53  LHESDDLHESDGRVGGKRRNI 73


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 13/55 (23%), Positives = 24/55 (43%)
 Frame = +1

Query: 46  TSRRHPSRSGDRDSNC*SSSTGLQQRDRRHAHRATGQDEQGEATHRSAFEGRSEH 210
           TSR+  SRS +R+ N   +    ++   R   R+  + E+  +  R      S +
Sbjct: 34  TSRKRYSRSREREQNSYKNEKEYRKYRERSKERSRDKRERERSKERKIISSLSNN 88


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 13/55 (23%), Positives = 24/55 (43%)
 Frame = +1

Query: 46  TSRRHPSRSGDRDSNC*SSSTGLQQRDRRHAHRATGQDEQGEATHRSAFEGRSEH 210
           TSR+  SRS +R+ N   +    ++   R   R+  + E+  +  R      S +
Sbjct: 34  TSRKRYSRSREREQNSYKNEKEYRKYRERSKERSRDKRERERSKERKIISSLSNN 88


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -1

Query: 139 ARAGDLFAVVLWRNFNSCCLD 77
           A  G +F  + W +FNS  L+
Sbjct: 213 AMIGTIFLWLFWPSFNSAALE 233


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +1

Query: 46  TSRRHPSRSGDRDSNC*SSSTGLQQRDRRHAHRATGQDEQ 165
           TSR+  SRS +R+ N   +    ++   R   R+  + E+
Sbjct: 267 TSRKRYSRSREREQNSYKNEREYRKYRERSKERSRDRTER 306


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,731
Number of Sequences: 438
Number of extensions: 3591
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16381902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)