Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0644
(571 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g26910.3 68417.m03871 2-oxoacid dehydrogenase family protein ... 163 1e-40
At4g26910.2 68417.m03873 2-oxoacid dehydrogenase family protein ... 163 1e-40
At4g26910.1 68417.m03872 2-oxoacid dehydrogenase family protein ... 163 1e-40
At5g55070.1 68418.m06864 2-oxoacid dehydrogenase family protein ... 162 2e-40
At3g52200.1 68416.m05733 dihydrolipoamide S-acetyltransferase, p... 60 1e-09
At3g06850.2 68416.m00813 branched chain alpha-keto acid dehydrog... 45 3e-05
At3g06850.1 68416.m00812 branched chain alpha-keto acid dehydrog... 45 3e-05
At1g34430.1 68414.m04277 dihydrolipoamide S-acetyltransferase, p... 44 7e-05
At3g25860.1 68416.m03222 dihydrolipoamide S-acetyltransferase (L... 39 0.003
At1g54220.1 68414.m06182 dihydrolipoamide S-acetyltransferase, p... 37 0.011
At3g13930.1 68416.m01759 dihydrolipoamide S-acetyltransferase, p... 34 0.058
At2g45630.2 68415.m05674 oxidoreductase family protein low simil... 33 0.10
At2g45630.1 68415.m05673 oxidoreductase family protein low simil... 33 0.10
At1g70620.1 68414.m08138 cyclin-related contains weak similarity... 31 0.54
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 31 0.72
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 31 0.72
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 31 0.72
At5g60410.2 68418.m07579 DNA-binding family protein contains Pfa... 30 0.95
At5g60410.1 68418.m07578 DNA-binding family protein contains Pfa... 30 0.95
At2g06990.1 68415.m00800 HUA enhancer 2 (HEN2) / DExH-box RNA he... 29 1.7
At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp... 29 2.2
At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp... 29 2.2
At1g80930.1 68414.m09495 MIF4G domain-containing protein / MA3 d... 29 2.2
At5g02430.1 68418.m00167 WD-40 repeat family protein contains 6 ... 29 2.9
At4g11580.1 68417.m01856 F-box family protein predicted protein,... 29 2.9
At2g38250.1 68415.m04697 DNA-binding protein-related contains si... 28 3.8
At5g08450.2 68418.m00996 expressed protein KED, Nicotiana tabacu... 27 6.7
At5g08450.1 68418.m00995 expressed protein KED, Nicotiana tabacu... 27 6.7
At4g11720.1 68417.m01870 hypothetical protein 27 6.7
At2g33435.1 68415.m04098 RNA recognition motif (RRM)-containing ... 27 6.7
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 27 6.7
At4g35240.1 68417.m05009 expressed protein contains Pfam domains... 27 8.8
At2g04620.1 68415.m00470 cation efflux family protein potential ... 27 8.8
At1g79200.1 68414.m09234 expressed protein 27 8.8
>At4g26910.3 68417.m03871 2-oxoacid dehydrogenase family protein
similar to SP|P36957 Dihydrolipoamide
succinyltransferase component of 2-oxoglutarate
dehydrogenase complex, mitochondrial precursor (EC
2.3.1.61) {Homo sapiens}; contains Pfam profiles
PF00198: 2-oxo acid dehydrogenases acyltransferase
(catalytic domain), PF00364: Biotin-requiring enzyme
Length = 365
Score = 163 bits (395), Expect = 1e-40
Identities = 79/136 (58%), Positives = 103/136 (75%), Gaps = 2/136 (1%)
Frame = +2
Query: 101 PPQDYSKE--IAGTRTEQRVKMNRGRQRIAQRLKDAQNTNAMLTTFNEIDMSHIMAFRKK 274
PP+ +KE + E+RV M R R+R+A RLKD+QNT A+LTTFNE+DM+++M R +
Sbjct: 120 PPKQSAKEPQLPPKERERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSQ 179
Query: 275 HLDTFTKKHSIKLGLMSPFVKAAANALMDQPVVNAVIEENEIIYRDYVDISVAVATPKGL 454
+ D F +KH +KLGLMS F+KAA +AL QPVVNAVI+ ++IIYRDYVDIS+AV T KGL
Sbjct: 180 YKDAFYEKHGVKLGLMSGFIKAAVSALQHQPVVNAVIDGDDIIYRDYVDISIAVGTSKGL 239
Query: 455 VVPVIRNVQNMTYADI 502
VVPVIR M +A+I
Sbjct: 240 VVPVIRGADKMNFAEI 255
>At4g26910.2 68417.m03873 2-oxoacid dehydrogenase family protein
similar to SP|P36957 Dihydrolipoamide
succinyltransferase component of 2-oxoglutarate
dehydrogenase complex, mitochondrial precursor (EC
2.3.1.61) {Homo sapiens}; contains Pfam profiles
PF00198: 2-oxo acid dehydrogenases acyltransferase
(catalytic domain), PF00364: Biotin-requiring enzyme
Length = 463
Score = 163 bits (395), Expect = 1e-40
Identities = 79/136 (58%), Positives = 103/136 (75%), Gaps = 2/136 (1%)
Frame = +2
Query: 101 PPQDYSKE--IAGTRTEQRVKMNRGRQRIAQRLKDAQNTNAMLTTFNEIDMSHIMAFRKK 274
PP+ +KE + E+RV M R R+R+A RLKD+QNT A+LTTFNE+DM+++M R +
Sbjct: 218 PPKQSAKEPQLPPKERERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSQ 277
Query: 275 HLDTFTKKHSIKLGLMSPFVKAAANALMDQPVVNAVIEENEIIYRDYVDISVAVATPKGL 454
+ D F +KH +KLGLMS F+KAA +AL QPVVNAVI+ ++IIYRDYVDIS+AV T KGL
Sbjct: 278 YKDAFYEKHGVKLGLMSGFIKAAVSALQHQPVVNAVIDGDDIIYRDYVDISIAVGTSKGL 337
Query: 455 VVPVIRNVQNMTYADI 502
VVPVIR M +A+I
Sbjct: 338 VVPVIRGADKMNFAEI 353
>At4g26910.1 68417.m03872 2-oxoacid dehydrogenase family protein
similar to SP|P36957 Dihydrolipoamide
succinyltransferase component of 2-oxoglutarate
dehydrogenase complex, mitochondrial precursor (EC
2.3.1.61) {Homo sapiens}; contains Pfam profiles
PF00198: 2-oxo acid dehydrogenases acyltransferase
(catalytic domain), PF00364: Biotin-requiring enzyme
Length = 464
Score = 163 bits (395), Expect = 1e-40
Identities = 79/136 (58%), Positives = 103/136 (75%), Gaps = 2/136 (1%)
Frame = +2
Query: 101 PPQDYSKE--IAGTRTEQRVKMNRGRQRIAQRLKDAQNTNAMLTTFNEIDMSHIMAFRKK 274
PP+ +KE + E+RV M R R+R+A RLKD+QNT A+LTTFNE+DM+++M R +
Sbjct: 219 PPKQSAKEPQLPPKERERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSQ 278
Query: 275 HLDTFTKKHSIKLGLMSPFVKAAANALMDQPVVNAVIEENEIIYRDYVDISVAVATPKGL 454
+ D F +KH +KLGLMS F+KAA +AL QPVVNAVI+ ++IIYRDYVDIS+AV T KGL
Sbjct: 279 YKDAFYEKHGVKLGLMSGFIKAAVSALQHQPVVNAVIDGDDIIYRDYVDISIAVGTSKGL 338
Query: 455 VVPVIRNVQNMTYADI 502
VVPVIR M +A+I
Sbjct: 339 VVPVIRGADKMNFAEI 354
>At5g55070.1 68418.m06864 2-oxoacid dehydrogenase family protein
similar to SP|Q01205 Dihydrolipoamide
succinyltransferase component of 2-oxoglutarate
dehydrogenase complex, mitochondrial precursor (EC
2.3.1.61) {Rattus norvegicus}; contains Pfam profiles
PF00198: 2-oxo acid dehydrogenases acyltransferase
(catalytic domain), PF00364: Biotin-requiring enzyme
Length = 464
Score = 162 bits (393), Expect = 2e-40
Identities = 76/120 (63%), Positives = 97/120 (80%)
Frame = +2
Query: 143 EQRVKMNRGRQRIAQRLKDAQNTNAMLTTFNEIDMSHIMAFRKKHLDTFTKKHSIKLGLM 322
E+RV M R R+R+A RLKD+QNT A+LTTFNE+DM+++M R ++ D F +KH +KLGLM
Sbjct: 235 ERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSQYKDAFLEKHGVKLGLM 294
Query: 323 SPFVKAAANALMDQPVVNAVIEENEIIYRDYVDISVAVATPKGLVVPVIRNVQNMTYADI 502
S F+KAA +AL QPVVNAVI+ ++IIYRDYVDIS+AV T KGLVVPVIR+ M +ADI
Sbjct: 295 SGFIKAAVSALQHQPVVNAVIDGDDIIYRDYVDISIAVGTSKGLVVPVIRDADKMNFADI 354
>At3g52200.1 68416.m05733 dihydrolipoamide S-acetyltransferase,
putative similar to dihydrolipoamide acetyltransferase
(E2) subunit of PDC [Arabidopsis thaliana] GI:559395;
contains Pfam profiles PF00198: 2-oxo acid
dehydrogenases acyltransferase (catalytic domain),
PF00364: Biotin-requiring enzyme, PF02817: e3 binding
domain; supporting cDNA
gi|5881964|gb|AF066080.1|AF066080
Length = 637
Score = 60.1 bits (139), Expect = 1e-09
Identities = 37/113 (32%), Positives = 64/113 (56%), Gaps = 2/113 (1%)
Frame = +2
Query: 170 RQRIAQRLKDAQNTNAMLTTFNEIDMSHIMAFRKKHLDTFTKKHSIKLGLMSPFVKAAAN 349
R+ IA+RL +++ L +++ + ++AFRK+ + H +K+ + +KA A
Sbjct: 416 RKIIAKRLLESKQKIPHLYLQSDVVLDPLLAFRKE----LQENHGVKVSVNDIVIKAVAV 471
Query: 350 ALMDQPVVNAV--IEENEIIYRDYVDISVAVATPKGLVVPVIRNVQNMTYADI 502
AL + NA E+ +I+ D VDIS+AVAT KGL+ P+I+N + + I
Sbjct: 472 ALRNVRQANAFWDAEKGDIVMCDSVDISIAVATEKGLMTPIIKNADQKSISAI 524
>At3g06850.2 68416.m00813 branched chain alpha-keto acid
dehydrogenase E2 subunit (din3) identical to branched
chain alpha-keto acid dehydrogenase E2 subunit (din3)
[Arabidopsis thaliana] GI:7021284
Length = 483
Score = 45.2 bits (102), Expect = 3e-05
Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Frame = +2
Query: 302 SIKLGLMSPFVKAAANALMDQPVVNAVI--EENEIIYRDYVDISVAVATPKGLVVPVIRN 475
+IK + +K+ + AL P VN+ E EII + +I VA+AT GLVVP I+N
Sbjct: 303 TIKHTFLPTLIKSLSMALTKYPFVNSCFNAESLEIILKGSHNIGVAMATEHGLVVPNIKN 362
Query: 476 VQNMTYADI 502
VQ+++ +I
Sbjct: 363 VQSLSLLEI 371
>At3g06850.1 68416.m00812 branched chain alpha-keto acid
dehydrogenase E2 subunit (din3) identical to branched
chain alpha-keto acid dehydrogenase E2 subunit (din3)
[Arabidopsis thaliana] GI:7021284
Length = 483
Score = 45.2 bits (102), Expect = 3e-05
Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Frame = +2
Query: 302 SIKLGLMSPFVKAAANALMDQPVVNAVI--EENEIIYRDYVDISVAVATPKGLVVPVIRN 475
+IK + +K+ + AL P VN+ E EII + +I VA+AT GLVVP I+N
Sbjct: 303 TIKHTFLPTLIKSLSMALTKYPFVNSCFNAESLEIILKGSHNIGVAMATEHGLVVPNIKN 362
Query: 476 VQNMTYADI 502
VQ+++ +I
Sbjct: 363 VQSLSLLEI 371
>At1g34430.1 68414.m04277 dihydrolipoamide S-acetyltransferase,
putative similar to dihydrolipoamide S-acetyltransferase
(LTA2) [Arabidopsis thaliana] GI:5881963; contains Pfam
profiles PF00198: 2-oxo acid dehydrogenases
acyltransferase (catalytic domain), PF00364:
Biotin-requiring enzyme, PF02817: e3 binding domain
Length = 465
Score = 44.0 bits (99), Expect = 7e-05
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Frame = +2
Query: 278 LDTFTKKHSIKLGLMSPFV-KAAANALMDQPVVNAVIEE-NEIIYRDYVDISVAVATPKG 451
LD KK K M+ + KA A AL PVVN+ + N +Y ++++VAVA G
Sbjct: 280 LDALYKKIKSKGVTMTALLAKATALALAKHPVVNSSCRDGNSFVYNSSINVAVAVAIDGG 339
Query: 452 LVVPVIRNVQNM 487
L+ PV++N +
Sbjct: 340 LITPVLQNADKV 351
>At3g25860.1 68416.m03222 dihydrolipoamide S-acetyltransferase
(LTA2) identical to dihydrolipoamide S-acetyltransferase
(LTA2) [Arabidopsis thaliana] GI:5881963
Length = 480
Score = 38.7 bits (86), Expect = 0.003
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = +2
Query: 335 KAAANALMDQPVVNAVIEENEII-YRDYVDISVAVATPKGLVVPVIRNVQNM 487
KAA AL PVVNA ++ + Y ++I+VAVA GL+ PV+++ +
Sbjct: 315 KAAGMALAQHPVVNASCKDGKSFSYNSSINIAVAVAINGGLITPVLQDADKL 366
>At1g54220.1 68414.m06182 dihydrolipoamide S-acetyltransferase,
putative similar to dihydrolipoamide S-acetyltransferase
GI:5669871 [Zea mays]; contains Pfam profiles PF00198:
2-oxo acid dehydrogenases acyltransferase (catalytic
domain), PF00364: Biotin-requiring enzyme, PF02817: e3
binding domain
Length = 539
Score = 36.7 bits (81), Expect = 0.011
Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 1/103 (0%)
Frame = +2
Query: 170 RQRIAQRLKDAQNTNAMLTTFNEIDMSHIMAFRKKHLDTFTKKHSIK-LGLMSPFVKAAA 346
R+ A RL ++ T + + +MA R + L++F + K + + VKAAA
Sbjct: 318 RKVTASRLAFSKQTIPHYYLTVDTCVDKLMALRSQ-LNSFKEASGGKRISVNDLVVKAAA 376
Query: 347 NALMDQPVVNAVIEENEIIYRDYVDISVAVATPKGLVVPVIRN 475
AL P N+ ++ I V+I+VAV T GL VPV+++
Sbjct: 377 LALRKVPQCNSSWTDDYIRQFKNVNINVAVQTENGLYVPVVKD 419
>At3g13930.1 68416.m01759 dihydrolipoamide S-acetyltransferase,
putative similar to dihydrolipoamide S-acetyltransferase
[Zea mays] GI:5669871; contains Pfam profiles PF00198:
2-oxo acid dehydrogenases acyltransferase (catalytic
domain), PF00364: Biotin-requiring enzyme, PF02817: e3
binding domain
Length = 539
Score = 34.3 bits (75), Expect = 0.058
Identities = 20/48 (41%), Positives = 28/48 (58%)
Frame = +2
Query: 332 VKAAANALMDQPVVNAVIEENEIIYRDYVDISVAVATPKGLVVPVIRN 475
+KAAA AL P N+ + I V+I+VAV T GL VPV+++
Sbjct: 372 IKAAALALRKVPQCNSSWTDEYIRQFKNVNINVAVQTENGLYVPVVKD 419
>At2g45630.2 68415.m05674 oxidoreductase family protein low
similarity to SP|P36234 Glycerate dehydrogenase (EC
1.1.1.29) (NADH-dependent hydroxypyruvate reductase)
{Hyphomicrobium methylovorum}; contains Pfam profile
PF00389: D-isomer specific 2-hydroxyacid dehydrogenase,
catalytic domain
Length = 338
Score = 33.5 bits (73), Expect = 0.10
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = -1
Query: 307 DAVLLSEGVEVLLTECHDVGHVDLVECRQHGVRVLSVLQTLSD 179
D + + + +++T V HVDLVECR+ G+ V + + S+
Sbjct: 83 DLIRILPNLRLVVTTSAGVDHVDLVECRRRGISVANAGSSFSE 125
>At2g45630.1 68415.m05673 oxidoreductase family protein low
similarity to SP|P36234 Glycerate dehydrogenase (EC
1.1.1.29) (NADH-dependent hydroxypyruvate reductase)
{Hyphomicrobium methylovorum}; contains Pfam profile
PF00389: D-isomer specific 2-hydroxyacid dehydrogenase,
catalytic domain
Length = 186
Score = 33.5 bits (73), Expect = 0.10
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = -1
Query: 307 DAVLLSEGVEVLLTECHDVGHVDLVECRQHGVRVLSVLQTLSD 179
D + + + +++T V HVDLVECR+ G+ V + + S+
Sbjct: 83 DLIRILPNLRLVVTTSAGVDHVDLVECRRRGISVANAGSSFSE 125
>At1g70620.1 68414.m08138 cyclin-related contains weak similarity to
Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide I)
[Bos taurus]
Length = 897
Score = 31.1 bits (67), Expect = 0.54
Identities = 36/148 (24%), Positives = 53/148 (35%), Gaps = 2/148 (1%)
Frame = +1
Query: 121 RDRRHAHRATGQDEQGEATHRSAFEGRSEHER--HVDDIQRDRHVPHHGIP*EAPRHLH* 294
RD HR ++++G+ + E RS H R + +R R + ++ R
Sbjct: 746 RDVERPHRTNSKEDRGKRKEKEKEEERSRHRRAENSSKDKRRRSPTSNESSDDSKRKSRS 805
Query: 295 EAQHQTRSDVTFREGGRQRPDGPARGERCYRRKRDNL*GLRRYFGSGRHTERSRRAGHQK 474
+ + S V R R P + R+ G R S R+ H K
Sbjct: 806 RRRSVSPSPVRSRR-KRSSPSSDESSDDSKRKSSSKRKNRSPSPGKSRRRHVSSRSPHSK 864
Query: 475 RSEHDLC*YSSSP*LG*RKKREPVSSRS 558
S+H YSS R KR SRS
Sbjct: 865 HSQHKNTLYSSHD--KSRSKRSRSRSRS 890
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 30.7 bits (66), Expect = 0.72
Identities = 29/116 (25%), Positives = 42/116 (36%), Gaps = 1/116 (0%)
Frame = +1
Query: 115 QQRDR-RHAHRATGQDEQGEATHRSAFEGRSEHERHVDDIQRDRHVPHHGIP*EAPRHLH 291
+ +DR R R ++ E + RS + + D RD HH + RH
Sbjct: 50 RSKDREREKGRDKDRERDSEVSRRSRDRDGEKSKERSRDKDRDHRERHH----RSSRH-- 103
Query: 292 *EAQHQTRSDVTFREGGRQRPDGPARGERCYRRKRDNL*GLRRYFGSGRHTERSRR 459
H GGR D +R + R+RD+ G R R +RS R
Sbjct: 104 --RDHSRERGERRERGGRDDDDYRRSRDRDHDRRRDDRGGRRSRRSRSRSKDRSER 157
Score = 30.7 bits (66), Expect = 0.72
Identities = 34/114 (29%), Positives = 47/114 (41%)
Frame = +1
Query: 142 RATGQDEQGEATHRSAFEGRSEHERHVDDIQRDRHVPHHGIP*EAPRHLH*EAQHQTRSD 321
R G+D+ E + R + RD+ H RH H ++H+ S
Sbjct: 56 REKGRDKDRERDSEVSRRSRDRDGEKSKERSRDKDRDHR------ERH-HRSSRHRDHS- 107
Query: 322 VTFREGGRQRPDGPARGERCYRRKRDNL*GLRRYFGSGRHTERSRRAGHQKRSE 483
RE G +R G R + YRR RD RR GR + RS R+ + RSE
Sbjct: 108 ---RERGERRERG-GRDDDDYRRSRDRDHDRRRDDRGGRRSRRS-RSRSKDRSE 156
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 30.7 bits (66), Expect = 0.72
Identities = 29/116 (25%), Positives = 42/116 (36%), Gaps = 1/116 (0%)
Frame = +1
Query: 115 QQRDR-RHAHRATGQDEQGEATHRSAFEGRSEHERHVDDIQRDRHVPHHGIP*EAPRHLH 291
+ +DR R R ++ E + RS + + D RD HH + RH
Sbjct: 50 RSKDREREKGRDKDRERDSEVSRRSRDRDGEKSKERSRDKDRDHRERHH----RSSRH-- 103
Query: 292 *EAQHQTRSDVTFREGGRQRPDGPARGERCYRRKRDNL*GLRRYFGSGRHTERSRR 459
H GGR D +R + R+RD+ G R R +RS R
Sbjct: 104 --RDHSRERGERRERGGRDDDDYRRSRDRDHDRRRDDRGGRRSRRSRSRSKDRSER 157
Score = 30.7 bits (66), Expect = 0.72
Identities = 34/114 (29%), Positives = 47/114 (41%)
Frame = +1
Query: 142 RATGQDEQGEATHRSAFEGRSEHERHVDDIQRDRHVPHHGIP*EAPRHLH*EAQHQTRSD 321
R G+D+ E + R + RD+ H RH H ++H+ S
Sbjct: 56 REKGRDKDRERDSEVSRRSRDRDGEKSKERSRDKDRDHR------ERH-HRSSRHRDHS- 107
Query: 322 VTFREGGRQRPDGPARGERCYRRKRDNL*GLRRYFGSGRHTERSRRAGHQKRSE 483
RE G +R G R + YRR RD RR GR + RS R+ + RSE
Sbjct: 108 ---RERGERRERG-GRDDDDYRRSRDRDHDRRRDDRGGRRSRRS-RSRSKDRSE 156
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 30.7 bits (66), Expect = 0.72
Identities = 29/116 (25%), Positives = 42/116 (36%), Gaps = 1/116 (0%)
Frame = +1
Query: 115 QQRDR-RHAHRATGQDEQGEATHRSAFEGRSEHERHVDDIQRDRHVPHHGIP*EAPRHLH 291
+ +DR R R ++ E + RS + + D RD HH + RH
Sbjct: 50 RSKDREREKGRDKDRERDSEVSRRSRDRDGEKSKERSRDKDRDHRERHH----RSSRH-- 103
Query: 292 *EAQHQTRSDVTFREGGRQRPDGPARGERCYRRKRDNL*GLRRYFGSGRHTERSRR 459
H GGR D +R + R+RD+ G R R +RS R
Sbjct: 104 --RDHSRERGERRERGGRDDDDYRRSRDRDHDRRRDDRGGRRSRRSRSRSKDRSER 157
Score = 30.7 bits (66), Expect = 0.72
Identities = 34/114 (29%), Positives = 47/114 (41%)
Frame = +1
Query: 142 RATGQDEQGEATHRSAFEGRSEHERHVDDIQRDRHVPHHGIP*EAPRHLH*EAQHQTRSD 321
R G+D+ E + R + RD+ H RH H ++H+ S
Sbjct: 56 REKGRDKDRERDSEVSRRSRDRDGEKSKERSRDKDRDHR------ERH-HRSSRHRDHS- 107
Query: 322 VTFREGGRQRPDGPARGERCYRRKRDNL*GLRRYFGSGRHTERSRRAGHQKRSE 483
RE G +R G R + YRR RD RR GR + RS R+ + RSE
Sbjct: 108 ---RERGERRERG-GRDDDDYRRSRDRDHDRRRDDRGGRRSRRS-RSRSKDRSE 156
>At5g60410.2 68418.m07579 DNA-binding family protein contains Pfam
profiles: PF02037 SAP domain, PF02891 MIZ zinc finger,
PF00628 PHD-finger
Length = 885
Score = 30.3 bits (65), Expect = 0.95
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Frame = +2
Query: 164 RGRQRIAQRLKDAQNTN-AMLTTFNEIDMSHIMAFRKKHLDTFTKKHSIKLGLMSPFVKA 340
R I+ RL D+ + N T N I+ SH M+ R+ +DT T+ S+ LG+
Sbjct: 782 RSEDWISLRLGDSASGNHGDPATTNGINSSHQMSTREGSMDTTTETASLLLGMNDSRQDK 841
Query: 341 AANALMDQP 367
A D P
Sbjct: 842 AKKQRSDNP 850
>At5g60410.1 68418.m07578 DNA-binding family protein contains Pfam
profiles: PF02037 SAP domain, PF02891 MIZ zinc finger,
PF00628 PHD-finger
Length = 873
Score = 30.3 bits (65), Expect = 0.95
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Frame = +2
Query: 164 RGRQRIAQRLKDAQNTN-AMLTTFNEIDMSHIMAFRKKHLDTFTKKHSIKLGLMSPFVKA 340
R I+ RL D+ + N T N I+ SH M+ R+ +DT T+ S+ LG+
Sbjct: 782 RSEDWISLRLGDSASGNHGDPATTNGINSSHQMSTREGSMDTTTETASLLLGMNDSRQDK 841
Query: 341 AANALMDQP 367
A D P
Sbjct: 842 AKKQRSDNP 850
>At2g06990.1 68415.m00800 HUA enhancer 2 (HEN2) / DExH-box RNA
helicase, putative nearly identical to HUA enhancer 2
[Arabidopsis thaliana] GI:16024936
Length = 995
Score = 29.5 bits (63), Expect = 1.7
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 418 RYFGSGRHTERSRRAGHQKRSEHDLC 495
RY GSG + + S RAG + + E +C
Sbjct: 460 RYIGSGEYIQMSGRAGRRGKDERGIC 485
>At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein contains Pfam domain PF01805:
Surp module
Length = 844
Score = 29.1 bits (62), Expect = 2.2
Identities = 27/97 (27%), Positives = 36/97 (37%)
Frame = +1
Query: 34 HLLNTSRRHPSRSGDRDSNC*SSSTGLQQRDRRHAHRATGQDEQGEATHRSAFEGRSEHE 213
H + R S+S DR SS + R R H +D RS +HE
Sbjct: 689 HSRSRHRHRHSKSSDRHELYDSSDNEGEHRHRSSKH---SKDVDYSKDKRSHHHRSRKHE 745
Query: 214 RHVDDIQRDRHVPHHGIP*EAPRHLH*EAQHQTRSDV 324
+H D + H HH RH +H+ SDV
Sbjct: 746 KHRDSSDDEHH--HH-------RHRSSRRKHEDSSDV 773
>At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein contains Pfam domain PF01805:
Surp module
Length = 843
Score = 29.1 bits (62), Expect = 2.2
Identities = 27/97 (27%), Positives = 36/97 (37%)
Frame = +1
Query: 34 HLLNTSRRHPSRSGDRDSNC*SSSTGLQQRDRRHAHRATGQDEQGEATHRSAFEGRSEHE 213
H + R S+S DR SS + R R H +D RS +HE
Sbjct: 689 HSRSRHRHRHSKSSDRHELYDSSDNEGEHRHRSSKH---SKDVDYSKDKRSHHHRSRKHE 745
Query: 214 RHVDDIQRDRHVPHHGIP*EAPRHLH*EAQHQTRSDV 324
+H D + H HH RH +H+ SDV
Sbjct: 746 KHRDSSDDEHH--HH-------RHRSSRRKHEDSSDV 773
>At1g80930.1 68414.m09495 MIF4G domain-containing protein / MA3
domain-containing protein similar to SP|Q9P6R9 Cell
cycle control protein cwf22 {Schizosaccharomyces pombe};
contains Pfam profiles PF02854: MIF4G domain, PF02847:
MA3 domain
Length = 900
Score = 29.1 bits (62), Expect = 2.2
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Frame = +1
Query: 49 SRRHPSRSGDRDSNC*SSSTGLQQRDR-RHAHRATGQDEQGEATHRSAFEGRSEHERHVD 225
SR + D + + S G ++ R R HRA+ DE+GE RS G+ +++R +
Sbjct: 179 SRVIADKPSDEEDDRQRSRGGRRESQRKRRDHRASDDDEEGEI--RSERRGKEKNDRGSE 236
Query: 226 D-IQRDR 243
++RDR
Sbjct: 237 GLLKRDR 243
>At5g02430.1 68418.m00167 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); rab11 binding protein, Bos
taurus, EMBL:AF117897
Length = 905
Score = 28.7 bits (61), Expect = 2.9
Identities = 19/86 (22%), Positives = 40/86 (46%)
Frame = +2
Query: 62 RHAQAIETATVKVPPQDYSKEIAGTRTEQRVKMNRGRQRIAQRLKDAQNTNAMLTTFNEI 241
+ AQA + + P + S E+ T + R+++ G + + Q+ + +N N+ +T +
Sbjct: 647 KKAQAKKITAFQFSPINPS-EVLVTSADSRIRVLDGTE-LVQKFRGFKNMNSQMTASYTV 704
Query: 242 DMSHIMAFRKKHLDTFTKKHSIKLGL 319
D HI+ + K +LG+
Sbjct: 705 DAKHIVCASEDSQVYVWKHEEPRLGI 730
>At4g11580.1 68417.m01856 F-box family protein predicted protein,
Caenorhabditis elegans, PIR2:S44609 ; similar to SKP1
interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 333
Score = 28.7 bits (61), Expect = 2.9
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Frame = +2
Query: 179 IAQRLKDAQNTNAMLTTFNEIDMSHIMAFRKKHLDTFTKKHSI--KLGLMSPFVKAAANA 352
+A K NT LT E+D+S I F+ K F KH + K GL + K +
Sbjct: 47 LASHNKTLWNT-VDLTNLQELDVSRIFNFKDKERPIFFYKHPVDHKHGLTNLLTKIISRF 105
Query: 353 LMD 361
+D
Sbjct: 106 FLD 108
>At2g38250.1 68415.m04697 DNA-binding protein-related contains
similarity to DNA-binding protein GI:170271 from
[Nicotiana tabacum]
Length = 289
Score = 28.3 bits (60), Expect = 3.8
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = +1
Query: 301 QHQTRSDVTFREGGRQRPDGPARGERCYRRKRDNL*GLRRYF-GSGRHTERSRRAGHQKR 477
+HQ R + +REG R A E +RRK + L R R E RR+ + R
Sbjct: 209 RHQVRMESEWREGWEAREKERAEKEEEWRRKMEELEKERLAMERMWRDREEQRRSREEMR 268
Query: 478 SE 483
+E
Sbjct: 269 AE 270
>At5g08450.2 68418.m00996 expressed protein KED, Nicotiana tabacum,
EMBL:AB009883
Length = 918
Score = 27.5 bits (58), Expect = 6.7
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +2
Query: 338 AAANALMDQPVVNAVIEENEIIYRDYVDISVAVATPKGLVVPVIRNVQ 481
AA+NAL Q V V + + ++ S+++ KGL P+ + +
Sbjct: 738 AASNALRQQRFVREVTIQYNLCNEPWIKYSISIVADKGLKKPLFTSAR 785
>At5g08450.1 68418.m00995 expressed protein KED, Nicotiana tabacum,
EMBL:AB009883
Length = 918
Score = 27.5 bits (58), Expect = 6.7
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +2
Query: 338 AAANALMDQPVVNAVIEENEIIYRDYVDISVAVATPKGLVVPVIRNVQ 481
AA+NAL Q V V + + ++ S+++ KGL P+ + +
Sbjct: 738 AASNALRQQRFVREVTIQYNLCNEPWIKYSISIVADKGLKKPLFTSAR 785
>At4g11720.1 68417.m01870 hypothetical protein
Length = 658
Score = 27.5 bits (58), Expect = 6.7
Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 6/69 (8%)
Frame = +1
Query: 127 RRHAHRATGQDEQG------EATHRSAFEGRSEHERHVDDIQRDRHVPHHGIP*EAPRHL 288
+RH H GQD+ E H + H H D Q+ R HGI PR +
Sbjct: 589 QRHKHHH-GQDDDVLQKMMLERDHSDSHYYHQLHRVHKDSKQKQRRRAKHGI--VLPRDV 645
Query: 289 H*EAQHQTR 315
H E Q + R
Sbjct: 646 HVERQRKQR 654
>At2g33435.1 68415.m04098 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 979
Score = 27.5 bits (58), Expect = 6.7
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Frame = +1
Query: 97 SSSTGLQQRDRRHAHRATGQDEQGEAT-----HRSAFEGRSEHERHVDDIQRDRHVPHH 258
S L+++ RR R GQD Q ++ ++ + HE +++ +DR HH
Sbjct: 691 SRQRDLREKRRRSRSRDHGQDRQKRSSPLPRAEKATSRHKRNHEERSENVVKDRSGKHH 749
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 27.5 bits (58), Expect = 6.7
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +1
Query: 115 QQRDRRHAHRATGQDEQGEATH-RSAFEGRSEHERHVDDIQRDRH 246
++R R HR + E+ E R + RS H D +RDRH
Sbjct: 36 KERSRSSRHRGDKKKERDEDEDGRRSKRSRSHHRSRSRDRERDRH 80
>At4g35240.1 68417.m05009 expressed protein contains Pfam domains,
PF04782: Protein of unknown function (DUF632) and
PF04783: Protein of unknown function (DUF630)
Length = 828
Score = 27.1 bits (57), Expect = 8.8
Identities = 17/69 (24%), Positives = 23/69 (33%)
Frame = +1
Query: 61 PSRSGDRDSNC*SSSTGLQQRDRRHAHRATGQDEQGEATHRSAFEGRSEHERHVDDIQRD 240
P R GD D +S + H H ++ H E E DD+ D
Sbjct: 80 PQRKGDLDDEATNSPKKQKLASSHHNHNHAHSGSGSDSGHLEFDSDSDEDEEDDDDLDLD 139
Query: 241 RHVPHHGIP 267
+ HH P
Sbjct: 140 -SLHHHSPP 147
>At2g04620.1 68415.m00470 cation efflux family protein potential
member of the cation diffusion facilitator (CDF) family,
or cation efflux (CE) family, see PMID:11500563
Length = 798
Score = 27.1 bits (57), Expect = 8.8
Identities = 15/61 (24%), Positives = 22/61 (36%)
Frame = +1
Query: 124 DRRHAHRATGQDEQGEATHRSAFEGRSEHERHVDDIQRDRHVPHHGIP*EAPRHLH*EAQ 303
+ HAH +G +H+S EH +H D + + H H H H
Sbjct: 544 EHHHAHGGSGCTHSH--SHQSHSHKNEEHHQHSDSHKHEEHHQHSDSHKHEEHHEHDHHH 601
Query: 304 H 306
H
Sbjct: 602 H 602
>At1g79200.1 68414.m09234 expressed protein
Length = 159
Score = 27.1 bits (57), Expect = 8.8
Identities = 16/73 (21%), Positives = 31/73 (42%)
Frame = +1
Query: 49 SRRHPSRSGDRDSNC*SSSTGLQQRDRRHAHRATGQDEQGEATHRSAFEGRSEHERHVDD 228
+R S S D + G ++ D R + R+ +D++ H+S+ +S+ ++
Sbjct: 15 ARSEDSSSSDYEEKV-KRHRGTEKDDERRSRRSDKKDKKSHKHHKSSTSKKSKDDKPKKK 73
Query: 229 IQRDRHVPHHGIP 267
H GIP
Sbjct: 74 HTESDHKLKEGIP 86
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,854,725
Number of Sequences: 28952
Number of extensions: 235541
Number of successful extensions: 753
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1102220672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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