Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0643
         (434 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    24   0.72 
AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory recept...    24   0.72 
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    21   5.1  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   6.7  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    20   8.9  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    20   8.9  
AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory recept...    20   8.9  
AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory recept...    20   8.9  

>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 23.8 bits (49), Expect = 0.72
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -1

Query: 221 NLSSN*MILRNSLYILLPHNEPIKHQEQE 135
           NL+ + MI+    YILL  N  + HQ  E
Sbjct: 431 NLNGDTMIVEAMAYILLAMNSAVCHQTIE 459



 Score = 21.8 bits (44), Expect = 2.9
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +1

Query: 151 LIGSLWGSKIYKLFRKIIQLEDRF 222
           + G++  SKI     K+I+L++RF
Sbjct: 94  MTGAVKHSKIAHFLNKMIRLDERF 117


>AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory receptor
           candidate 24 protein.
          Length = 384

 Score = 23.8 bits (49), Expect = 0.72
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -1

Query: 221 NLSSN*MILRNSLYILLPHNEPIKHQEQE 135
           NL+ + MI+    YILL  N  + HQ  E
Sbjct: 156 NLNGDTMIVEAMAYILLAMNSAVCHQTIE 184


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 7/19 (36%), Positives = 9/19 (47%)
 Frame = -1

Query: 428 HYRANWVPGPPSRATSSNP 372
           +    WVPG  +    SNP
Sbjct: 90  YVNGEWVPGGKAEVPPSNP 108


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 20.6 bits (41), Expect = 6.7
 Identities = 5/20 (25%), Positives = 13/20 (65%)
 Frame = +1

Query: 241 IHLFNITQLHKYFYVELIVC 300
           +HL  +  ++ ++Y+ L+ C
Sbjct: 250 VHLLLLVCIYYFYYMHLLFC 269


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 20.2 bits (40), Expect = 8.9
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -3

Query: 342 SLLFIGYLIIL 310
           S+L+IGY IIL
Sbjct: 879 SMLYIGYQIIL 889


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 20.2 bits (40), Expect = 8.9
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -3

Query: 342 SLLFIGYLIIL 310
           S+L+IGY IIL
Sbjct: 879 SMLYIGYQIIL 889


>AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory receptor
           candidate 39 protein.
          Length = 427

 Score = 20.2 bits (40), Expect = 8.9
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = -1

Query: 188 SLYILLPHNEPIKHQEQESGRTTIRSNPSDACFHHFLF 75
           SL +L      +  +    GRTT R   S + + +F+F
Sbjct: 55  SLLVLFQIMGVMPIERSGKGRTTFRWLSSTSIYAYFIF 92


>AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory receptor
           candidate 10 protein.
          Length = 437

 Score = 20.2 bits (40), Expect = 8.9
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = -1

Query: 188 SLYILLPHNEPIKHQEQESGRTTIRSNPSDACFHHFLF 75
           SL +L      +  +    GRTT R   S + + +F+F
Sbjct: 55  SLLVLFQIMGVMPIERSGKGRTTFRWLSSTSIYAYFIF 92


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,132
Number of Sequences: 336
Number of extensions: 2169
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9670396
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)