Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0643
         (434 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|c...    29   0.41 
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar...    25   3.8  
SPAC1D4.03c |aut12||autophagy associated protein Aut12|Schizosac...    25   5.0  
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        25   5.0  
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    25   6.7  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    25   6.7  
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom...    24   8.8  
SPAC227.09 |||folylpolyglutamate synthase|Schizosaccharomyces po...    24   8.8  
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|...    24   8.8  

>SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 436

 Score = 28.7 bits (61), Expect = 0.41
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -2

Query: 151 NIRNRNQVELLSGQTRP-TRASTIFYLFVCNVG 56
           N+RNRNQ  + +  ++P TR S IF + +   G
Sbjct: 246 NLRNRNQATITNSNSKPQTRRSKIFVISLLGYG 278


>SPMIT.02 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 384

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +1

Query: 229 PIQLIHLFNITQLHKYFYVELIVCGFV*NDQVTYKKKTTTKCLASN 366
           P+++IH F ITQ ++   +  I   F+ N Q++ K K+    L +N
Sbjct: 270 PVRIIHGFEITQNYEQPLLAQI-SEFLFNSQISPKIKSKKNSLITN 314


>SPAC1D4.03c |aut12||autophagy associated protein
           Aut12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 140 QESGRTTIRSNPSDACFHHFLF 75
           +E  RTT R NP   C  H+LF
Sbjct: 389 EEMDRTTPR-NPGSPCISHYLF 409


>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 160 NLSNIRNRNQVELLSGQ 110
           NL  +RN +QVELL G+
Sbjct: 585 NLQKLRNEHQVELLVGE 601


>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1429

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -1

Query: 140 QESGRTTIRSNPSDACFHHFLFICLQR-RIPLGVTSYD 30
           +E GRT IRSN     F   +++ +     PL ++ YD
Sbjct: 518 REHGRTPIRSNTFSPTFDTTIYVVINSLNDPLKLSLYD 555


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -3

Query: 222  KPVFQLNDFAE*LVYFTTPQ*TYQTSGTGIR*NYYPVK 109
            +P F        ++ F+TP   Y TSG G +    P+K
Sbjct: 1092 RPAFSFGPCGTIVMAFSTPSGLYTTSGKGTKFIAGPIK 1129


>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 986

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 10/19 (52%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
 Frame = +1

Query: 112 DRIVVLPDSCS-*CLIGSL 165
           DR V+LPDSC   C++G +
Sbjct: 244 DRQVILPDSCGYFCIMGEI 262


>SPAC227.09 |||folylpolyglutamate synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 417

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -1

Query: 200 ILRNSLYILLPHNEPIKHQEQESGRTTIRSNPS 102
           IL +S  I+LPH +         GR  IRS PS
Sbjct: 250 ILSSSFSIMLPHVQNGVKNTSWPGRLDIRSVPS 282


>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1369

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 183 QAIPQNHSIGRQVWETHSID 242
           Q I + HSI    WE+HS D
Sbjct: 304 QLIDETHSISDISWESHSQD 323


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,770,476
Number of Sequences: 5004
Number of extensions: 34366
Number of successful extensions: 81
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)