Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0643
         (434 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC010169-1|AAH10169.1|  196|Homo sapiens STAU1 protein protein.        33   0.42 
AY546099-1|AAS76637.1|  502|Homo sapiens staufen protein T4 vari...    33   0.42 
AY529074-1|AAS76636.1|  502|Homo sapiens staufen protein T5 vari...    33   0.42 
AL133174-6|CAI42821.1|  199|Homo sapiens staufen, RNA binding pr...    33   0.42 
AL133174-4|CAI42820.1|  502|Homo sapiens staufen, RNA binding pr...    33   0.42 

>BC010169-1|AAH10169.1|  196|Homo sapiens STAU1 protein protein.
          Length = 196

 Score = 33.1 bits (72), Expect = 0.42
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = -1

Query: 164 NEPIKHQEQESGRTTIRSNPSDACFHHFLFICLQRRIPLGVTSYDLNWLAREQG 3
           NEP+  + + +GR +   N + +       I L+R +P+   S+ L  +ARE G
Sbjct: 81  NEPLPERLEVNGRESEEENLNKSEISQVFEIALKRNLPVNFESFPLKQVARESG 134


>AY546099-1|AAS76637.1|  502|Homo sapiens staufen protein T4 variant
           protein.
          Length = 502

 Score = 33.1 bits (72), Expect = 0.42
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = -1

Query: 164 NEPIKHQEQESGRTTIRSNPSDACFHHFLFICLQRRIPLGVTSYDLNWLAREQG 3
           NEP+  + + +GR +   N + +       I L+R +P+   S+ L  +ARE G
Sbjct: 81  NEPLPERLEVNGRESEEENLNKSEISQVFEIALKRNLPVNFESFPLKQVARESG 134


>AY529074-1|AAS76636.1|  502|Homo sapiens staufen protein T5 variant
           protein.
          Length = 502

 Score = 33.1 bits (72), Expect = 0.42
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = -1

Query: 164 NEPIKHQEQESGRTTIRSNPSDACFHHFLFICLQRRIPLGVTSYDLNWLAREQG 3
           NEP+  + + +GR +   N + +       I L+R +P+   S+ L  +ARE G
Sbjct: 81  NEPLPERLEVNGRESEEENLNKSEISQVFEIALKRNLPVNFESFPLKQVARESG 134


>AL133174-6|CAI42821.1|  199|Homo sapiens staufen, RNA binding
           protein, homolog 1 (Drosophila) protein.
          Length = 199

 Score = 33.1 bits (72), Expect = 0.42
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = -1

Query: 164 NEPIKHQEQESGRTTIRSNPSDACFHHFLFICLQRRIPLGVTSYDLNWLAREQG 3
           NEP+  + + +GR +   N + +       I L+R +P+   S+ L  +ARE G
Sbjct: 81  NEPLPERLEVNGRESEEENLNKSEISQVFEIALKRNLPVNFESFPLKQVARESG 134


>AL133174-4|CAI42820.1|  502|Homo sapiens staufen, RNA binding
           protein, homolog 1 (Drosophila) protein.
          Length = 502

 Score = 33.1 bits (72), Expect = 0.42
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = -1

Query: 164 NEPIKHQEQESGRTTIRSNPSDACFHHFLFICLQRRIPLGVTSYDLNWLAREQG 3
           NEP+  + + +GR +   N + +       I L+R +P+   S+ L  +ARE G
Sbjct: 81  NEPLPERLEVNGRESEEENLNKSEISQVFEIALKRNLPVNFESFPLKQVARESG 134


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,195,090
Number of Sequences: 237096
Number of extensions: 1202318
Number of successful extensions: 2168
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2168
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3487985734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)