Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0643
         (434 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g22940.1 68418.m02682 exostosin family protein contains Pfam ...    31   0.34 
At1g16800.1 68414.m02018 tRNA-splicing endonuclease positive eff...    29   1.8  
At2g47980.1 68415.m06004 expressed protein                             28   3.1  
At5g22670.1 68418.m02649 F-box family protein contains F-box dom...    27   4.1  
At2g28100.1 68415.m03413 glycosyl hydrolase family 29 / alpha-L-...    27   7.2  
At1g63590.1 68414.m07188 receptor-like protein kinase-related co...    26   9.5  
At1g50770.1 68414.m05710 hypothetical protein                          26   9.5  
At1g24706.1 68414.m03104 expressed protein                             26   9.5  

>At5g22940.1 68418.m02682 exostosin family protein contains Pfam
           profile: PF03016 exostosin family
          Length = 469

 Score = 31.1 bits (67), Expect = 0.34
 Identities = 18/60 (30%), Positives = 30/60 (50%)
 Frame = -1

Query: 230 GFPNLSSN*MILRNSLYILLPHNEPIKHQEQESGRTTIRSNPSDACFHHFLFICLQRRIP 51
           GFP+LS    +L +++  L  H  P  ++ Q S    + S+   ACFH    + ++  IP
Sbjct: 177 GFPSLSHARSLLSSAVDFLSDHY-PFWNRSQGSDHVFVASHDFGACFHAMEDMAIEEGIP 235


>At1g16800.1 68414.m02018 tRNA-splicing endonuclease positive
           effector-related contains similarity to SEN1, a positive
           effector of tRNA-splicing endonuclease [Saccharomyces
           cerevisiae] gi|172574|gb|AAB63976
          Length = 1939

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
 Frame = +1

Query: 37  DVTPSGIRRCRQINKKWWKHASDGFDRIVVLP-DSCS*CLIGSLWGSKIYKLFRKIIQLE 213
           D  PS +RR  Q  ++W+   +D F  ++ LP D+   C  G + G  I   +      +
Sbjct: 27  DSDPSAVRRLNQRKEQWF---TDAFTLLISLPKDTHIWCGHGDIMGPLIETFYNYF--KD 81

Query: 214 DRFGKPIQLI 243
           DR   P++++
Sbjct: 82  DRVDSPLKVL 91


>At2g47980.1 68415.m06004 expressed protein
          Length = 1098

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +1

Query: 241 IHLFNITQLHKYFYVELIVCGFV*NDQVTYKKKTTT-KCLASNL 369
           IH+F + Q+ + F  + I+C +V +D   Y K     KC+ S L
Sbjct: 438 IHIFRMLQILREFSTDPILCVYVIDDVWEYMKAMKDWKCIISML 481


>At5g22670.1 68418.m02649 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 443

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 19/66 (28%), Positives = 32/66 (48%)
 Frame = +1

Query: 112 DRIVVLPDSCS*CLIGSLWGSKIYKLFRKIIQLEDRFGKPIQLIHLFNITQLHKYFYVEL 291
           D I +LPD    C I S   +K+      + +   RF   + L+  FN+++ H Y+    
Sbjct: 11  DSISLLPDDLL-CRILSNLPTKVAVRTSVLSKRWKRFSLSVPLLE-FNVSEFHGYYEFAR 68

Query: 292 IVCGFV 309
           +V GF+
Sbjct: 69  VVHGFL 74


>At2g28100.1 68415.m03413 glycosyl hydrolase family 29 /
           alpha-L-fucosidase, putative similar to
           alpha-L-fucosidase SP:P10901 from [Dictyostelium
           discoideum]
          Length = 506

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 176 KYTSYSAKSFNWKTGLGN 229
           +YT YS KS  W+ G G+
Sbjct: 114 EYTDYSVKSSQWRNGAGD 131


>At1g63590.1 68414.m07188 receptor-like protein kinase-related
           contains Pfam PF01657: Domain of unknown function;
           similar to receptor-like protein kinase 4 (GI:13506745)
           {Arabidopsis thaliana}
          Length = 268

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 157 LSNIRNRNQVELLSGQTRPTRASTIFYLFVC 65
           LS +RNR+ +   S  T     +TI+ +F+C
Sbjct: 53  LSTLRNRSSIGSYSNATAGLSPNTIYGMFLC 83


>At1g50770.1 68414.m05710 hypothetical protein
          Length = 632

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -1

Query: 179 ILLPHNEPIKHQEQESGRT 123
           I++ +NEP+ HQ+  SG T
Sbjct: 379 IMINNNEPVSHQQHASGGT 397


>At1g24706.1 68414.m03104 expressed protein
          Length = 1781

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 7/21 (33%), Positives = 15/21 (71%)
 Frame = +3

Query: 177 NIQAIPQNHSIGRQVWETHSI 239
           ++Q +P N ++G ++WE  S+
Sbjct: 514 SLQLVPANPAVGHEIWEVMSL 534


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,119,527
Number of Sequences: 28952
Number of extensions: 171597
Number of successful extensions: 362
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 362
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 683042040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)