Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0641
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.05c |||translation initiation factor eIF5 |Schizosacchar...    28   1.1  
SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces pomb...    27   1.9  
SPBC405.03c |||membrane transporter |Schizosaccharomyces pombe|c...    27   2.6  
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    27   3.4  
SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit ...    27   3.4  
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc...    26   4.5  
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F...    26   4.5  
SPCC188.02 |par1||protein phosphatase regulatory subunit Par1 |S...    26   5.9  
SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces pombe...    25   7.8  
SPBC56F2.03 |||actin-like protein Arp10 |Schizosaccharomyces pom...    25   7.8  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    25   7.8  
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe...    25   7.8  
SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces...    25   7.8  

>SPAC2F7.05c |||translation initiation factor eIF5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 395

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 27/118 (22%), Positives = 40/118 (33%)
 Frame = +3

Query: 231 TINLDLCEQVDAGLHMERSGNGTLDPKIRGSVFTIQTQTRTYHLEAECEAEMEKWVDVIC 410
           TI  D+   +  G H        LD  IR  V     Q     L      + ++ +   C
Sbjct: 67  TIIADMDRYIVNGAHDAGKLQDLLDVFIRRFVLCASCQNPETELSIN---KKDQTISYDC 123

Query: 411 RVCGLRSTDDDRPEAVASYQNNTRAASNDHYHRASETTGPYIPISECITGVRDQDDQR 584
           + CG R   D R +       N  A    H H+         P++E   G  D+  +R
Sbjct: 124 KACGYRGVIDGRHKLTGVIVKNPPAKKKSHKHKRDS------PVAEEEDGAEDELTRR 175


>SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -1

Query: 618 RETYDSQHRYRAFGRPDRARQ*YIPKSVCMGQWFQKRDDS 499
           RE    + R R    PD A   YIPK +    W+ + DD+
Sbjct: 30  REMKAQKRRSRPMDNPD-ADNPYIPKFISTAPWYAQDDDA 68


>SPBC405.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 341

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/26 (50%), Positives = 19/26 (73%)
 Frame = -2

Query: 605 IPNTGTVPLVVLIAHASDTFRNRYVW 528
           +P+T T  L+VLI +AS TF + Y+W
Sbjct: 256 LPST-TAGLIVLIINASITFVSDYLW 280


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 19/63 (30%), Positives = 24/63 (38%)
 Frame = +3

Query: 504 HRASETTGPYIPISECITGVRDQDDQRHGTGVGNHRSPLGRISENKTNPEVPQSTADPYN 683
           +RA     P     E  T       QR G GV    S   R S   T+P  P S ++P  
Sbjct: 138 NRAESIFSPVTESFEAFTQGMQTTPQRAGAGVSTATSHTRRRSSAGTDPFSPVSPSNPNF 197

Query: 684 RSP 692
            +P
Sbjct: 198 LTP 200



 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 612 SPLGRISENKTNPEVPQSTADPYNRS 689
           +PL  I   + NP +PQ  + P N S
Sbjct: 94  NPLAPIGARQPNPSIPQQFSKPINES 119


>SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit
           Rpn3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 497

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 24/103 (23%), Positives = 46/103 (44%), Gaps = 1/103 (0%)
 Frame = +3

Query: 93  TKSPPTKRIFRTKWQKRWFALRQSGELPGQYFLDYYSDRNCRRHKGTINLDLCEQVDAGL 272
           TK    + ++R+         R + ++ GQ    YYS  N  +++    +D+ +  D   
Sbjct: 51  TKQRDPRLVYRSLRTTSNICHRLNADVLGQLIKKYYSFDNSLKNELLELIDMPQNGDDSS 110

Query: 273 HMERSGNG-TLDPKIRGSVFTIQTQTRTYHLEAECEAEMEKWV 398
               +GNG T+ P++   +  + + T  Y+ + E  AE  K V
Sbjct: 111 TSITNGNGNTIFPEVDMYLQLLLSMTLYYNEKYEVGAEYIKKV 153


>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 630

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 19/78 (24%), Positives = 33/78 (42%)
 Frame = +3

Query: 435 DDDRPEAVASYQNNTRAASNDHYHRASETTGPYIPISECITGVRDQDDQRHGTGVGNHRS 614
           +DD  E  A  Q +   ++N++     +TT P    S  +T +         T + N  +
Sbjct: 293 EDDEEENQAETQKDGAISNNENMQSEVQTTNPSASTS-AVTNITKP------TLIQNPST 345

Query: 615 PLGRISENKTNPEVPQST 668
           PL   +    +PE P +T
Sbjct: 346 PLSVSNSKVASPETPNAT 363


>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
           Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = -2

Query: 170 LARLSQSEPPFLPFR 126
           LA L+Q+EPPFL FR
Sbjct: 119 LAPLAQAEPPFLGFR 133


>SPCC188.02 |par1||protein phosphatase regulatory subunit Par1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 548

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 20/79 (25%), Positives = 35/79 (44%)
 Frame = +3

Query: 450 EAVASYQNNTRAASNDHYHRASETTGPYIPISECITGVRDQDDQRHGTGVGNHRSPLGRI 629
           E+ ++  N +   + + +    + +G  +PI    T  RD+    +   V   RS L  I
Sbjct: 40  ESPSTDPNGSVIGAQNDFLTVPKHSGKKVPIDTTPTP-RDEILLENVRTVRKQRSSLYHI 98

Query: 630 SENKTNPEVPQSTADPYNR 686
           SEN+    +P  T  P N+
Sbjct: 99  SENRNLVRLPSFTDVPVNK 117


>SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +3

Query: 597 VGNHRSPLGRISENKTNPEVPQSTADPYNRSPS 695
           V +H S  G   + +  PEV    A+PY  S S
Sbjct: 49  VPSHLSHFGSSQQRRFAPEVSSPLAEPYESSSS 81


>SPBC56F2.03 |||actin-like protein Arp10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = +3

Query: 57  IMSKNIVFEGWLTKSPPTKRIFRTKWQKRWFALRQSGELPGQYFLD 194
           IMSK IVF G L   P   + F+ +   R  A++    +PGQ   D
Sbjct: 287 IMSKLIVFNGILPSLPGWYQRFQNEMTSRGLAIK---AVPGQTTAD 329


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = -1

Query: 615 ETYDSQHRYRAFGRPDRARQ*YI 547
           E YDS   YR F RPD     YI
Sbjct: 193 EPYDSNDLYRIFDRPDAVVLSYI 215


>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = -3

Query: 646 LVLFSEILPKGDL*FPTPVPCLWSS*SRTPVIHSEI 539
           L +F  +L K DL F    P  WSS SR+ +  SEI
Sbjct: 192 LKVFLSLLQK-DLIFRQNKPVYWSSSSRSALAESEI 226


>SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 378

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = -3

Query: 148 NHRFCHFVRNIRFVGGDFVNQPSNTIFLDIIVKNY 44
           ++  CHF  N      +F   P+ T +   + KNY
Sbjct: 265 DYNLCHFWSNFEIANLNFFRSPAYTDYFAHLDKNY 299


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,045,956
Number of Sequences: 5004
Number of extensions: 68022
Number of successful extensions: 208
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)