Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0641
(696 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1395 + 37010446-37010895 36 0.031
05_05_0038 - 21769936-21770199,21770785-21771198,21771274-217714... 33 0.22
03_05_1051 + 29978655-29979875 31 1.2
12_02_1091 - 26001129-26001181,26001292-26001325,26001339-260014... 30 1.5
11_01_0223 + 1746203-1746228,1746344-1746463,1746942-1747062,174... 30 1.5
02_05_1048 + 33748260-33748433,33748886-33748978,33750174-337503... 30 1.5
12_01_0119 + 905916-907277,907737-907774,908269-908492,909411-90... 30 2.0
03_02_0415 - 8263459-8263611,8263788-8263919,8264841-8264936,826... 30 2.0
07_03_1554 + 27659995-27660093,27661084-27661120,27661204-276612... 29 4.7
02_03_0110 - 15350939-15352162,15352591-15353310,15353776-15353949 29 4.7
12_02_0168 + 14827529-14828050 28 6.2
11_05_0069 - 18814789-18815326,18815742-18816001,18816077-188166... 28 6.2
04_04_1600 + 34704527-34704758,34705393-34706777 28 6.2
02_02_0421 - 10042184-10042197,10042442-10042822,10044158-100442... 28 6.2
02_01_0559 - 4113937-4114113,4115305-4115853 28 8.1
>01_06_1395 + 37010446-37010895
Length = 149
Score = 35.9 bits (79), Expect = 0.031
Identities = 39/139 (28%), Positives = 55/139 (39%), Gaps = 3/139 (2%)
Frame = +3
Query: 84 GWLTKSPPTKRIFRTKWQKRWFALRQSGELPGQYFLDYYSDRNCRR---HKGTINLDLCE 254
GWLTK + W++RWF L+Q G+ F ++ D R +G I + C
Sbjct: 26 GWLTKQGE----YIKTWRRRWFVLKQ-----GRLF--WFKDSGVTRASVPRGVIPVATCL 74
Query: 255 QVDAGLHMERSGNGTLDPKIRGSVFTIQTQTRTYHLEAECEAEMEKWVDVICRVCGLRST 434
V G D R F + T T + A+ E E E+W++ I R S
Sbjct: 75 TV----------KGAEDTLNRQFAFELSTPAETMYFIADSEKEKEEWINSIGRSIVQHSR 124
Query: 435 DDDRPEAVASYQNNTRAAS 491
E V Y + AAS
Sbjct: 125 SVTDAE-VVDYDSGRPAAS 142
>05_05_0038 -
21769936-21770199,21770785-21771198,21771274-21771434,
21771544-21771607,21771682-21771864,21772355-21772520,
21773397-21773528,21775085-21775599
Length = 632
Score = 33.1 bits (72), Expect = 0.22
Identities = 33/110 (30%), Positives = 46/110 (41%)
Frame = +3
Query: 84 GWLTKSPPTKRIFRTKWQKRWFALRQSGELPGQYFLDYYSDRNCRRHKGTINLDLCEQVD 263
GWL K + W++RWF L+Q G L +F D R +G I + C V
Sbjct: 42 GWLNKQGE----YIKTWRRRWFVLKQ-GRL--FWFKDAAVTRG-SVPRGVIPVATCLTV- 92
Query: 264 AGLHMERSGNGTLDPKIRGSVFTIQTQTRTYHLEAECEAEMEKWVDVICR 413
G D R F + T T T + A+ E E E+W++ I R
Sbjct: 93 ---------KGAEDVINRQFAFELSTPTDTMYFIADSEKEKEEWINSIGR 133
>03_05_1051 + 29978655-29979875
Length = 406
Score = 30.7 bits (66), Expect = 1.2
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = +3
Query: 153 LRQSGELPGQYFLDYYSDRNCRRHKGTINLDLCEQVDAGL 272
+ +SG LP ++ D + H+ + ++LC+ +DAG+
Sbjct: 348 MAESGHLPREHTYKLVKDEIEKAHEEALPVELCQSIDAGI 387
>12_02_1091 -
26001129-26001181,26001292-26001325,26001339-26001437,
26002327-26002369,26002389-26002494,26002776-26002818,
26003526-26003579,26003831-26003911,26003997-26004119,
26004197-26004846,26004928-26005554,26005633-26005870,
26006082-26006258,26006373-26006723,26006824-26007111,
26008340-26008462,26008551-26009007,26009115-26009263,
26009466-26009489
Length = 1239
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +3
Query: 543 SECITGVRDQDDQRHGTGVGNHRSPLGRISEN-KTNPEVPQSTADP 677
S C+ V ++ D R G+ + PLGR+ E +T P+ ++ P
Sbjct: 494 SACVEYVTEKTDGRSGSSITLFSGPLGRVQERIRTPVHAPEPSSPP 539
>11_01_0223 +
1746203-1746228,1746344-1746463,1746942-1747062,
1747441-1747572,1748266-1748375,1748465-1748648,
1749153-1749305,1749672-1749818
Length = 330
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +3
Query: 168 ELPGQYFLDYYSDRNCRRHKGTIN-LDLCEQVDAGLH 275
EL G Y + Y NC R ++N LDL +D H
Sbjct: 152 ELDGNYMIQNYVCPNCERRYSSLNALDLVSHIDNNFH 188
>02_05_1048 +
33748260-33748433,33748886-33748978,33750174-33750371,
33750502-33750675,33750769-33750875,33751233-33751564,
33751654-33752147
Length = 523
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Frame = +3
Query: 306 PKIRGSVFTIQTQTRTYH----LEAECEAEMEKWVDVICRV-CGLRSTDDDRPEAVASYQ 470
PK GS+F ++++YH LE E E+ + K++D + L S D + +A+ Q
Sbjct: 291 PKTEGSIFENPNKSKSYHGFSYLEGEHESHLSKYIDHVSPCDFPLMSKKDGMKDDIANQQ 350
Query: 471 NN 476
+
Sbjct: 351 QS 352
>12_01_0119 +
905916-907277,907737-907774,908269-908492,909411-909637,
909733-909980,910275-910557,910707-911135
Length = 936
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +3
Query: 345 TRTYHLEAECEAEMEKWVDVICRVCGLRS-TDDDRPEAVASYQNNTR 482
TR + L+A+ E ICR C + DD+R E ++Y+ NTR
Sbjct: 26 TRPFTLDAQVTDTFEALA--ICRDCKMTVLNDDERDEITSTYRQNTR 70
>03_02_0415 -
8263459-8263611,8263788-8263919,8264841-8264936,
8265021-8265137,8265352-8265435,8265517-8265577,
8266217-8266266,8266544-8266633,8267539-8267757,
8269207-8269262,8269469-8269546,8269707-8269811,
8269925-8270069,8270310-8270388,8270470-8270537,
8271550-8271626,8272676-8272712,8273107-8273232,
8273770-8273805
Length = 602
Score = 29.9 bits (64), Expect = 2.0
Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 4/100 (4%)
Frame = +3
Query: 108 TKRIFRTKWQKRWFALRQSGELPGQYFLDYYSDRNC--RRHKGTINLDLCEQVDAGLHME 281
+K I T W+KRWF L ++ + + SD N R ++ + L G+ +
Sbjct: 65 SKGIGWTTWKKRWFILTRAS------LVFFRSDPNAPPRGNEPIVTL-------GGIDLN 111
Query: 282 RSGNGTL--DPKIRGSVFTIQTQTRTYHLEAECEAEMEKW 395
SG+ + D K+ +F RT+ L+AE E+ +W
Sbjct: 112 NSGSVVVKEDKKLLTVLFPDGRDGRTFTLKAETTEELNEW 151
>07_03_1554 +
27659995-27660093,27661084-27661120,27661204-27661280,
27662272-27662342,27662512-27662590,27662726-27662828,
27662963-27663082,27663180-27663257,27663416-27663471,
27663588-27663657,27664179-27664266,27664503-27664800,
27664943-27665158,27665521-27665841,27666054-27666103,
27666493-27666553,27666633-27666716,27666926-27667039,
27667134-27667300,27667559-27667628,27668328-27668507,
27668619-27668807
Length = 875
Score = 28.7 bits (61), Expect = 4.7
Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 3/99 (3%)
Frame = +3
Query: 108 TKRIFRTKWQKRWFALRQSGELPGQYFLDYYSDRNCRRHK-GTINLDLCEQVDAGLHMER 284
+K I W+KRWF L ++ + + SD N + G +N+ L G+ +
Sbjct: 44 SKGIGWKSWKKRWFILTRTS------LVFFKSDPNTLPQRGGEVNVTL-----GGIDLNN 92
Query: 285 SGNGTL--DPKIRGSVFTIQTQTRTYHLEAECEAEMEKW 395
SG+ + D K+ +F R + L+AE ++ +W
Sbjct: 93 SGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLFEW 131
>02_03_0110 - 15350939-15352162,15352591-15353310,15353776-15353949
Length = 705
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +3
Query: 402 VICRVCGLRSTDDDRPEAVASYQNNTRAASNDHYHRASETTG 527
V+C+ CGL S+ D ++Q ++ SN HY R + TG
Sbjct: 634 VVCQPCGLGSSRD-------TWQQLGKSGSNTHYGRNQQPTG 668
>12_02_0168 + 14827529-14828050
Length = 173
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Frame = +2
Query: 527 PIHTDFGMYHWRARSGR--PKARYRC-WES*VSLGQDLG 634
P D G WR RSGR P R R W S +G+D G
Sbjct: 17 PGSVDGGAGRWRCRSGRSAPGGRRRARWGSAACVGEDAG 55
>11_05_0069 -
18814789-18815326,18815742-18816001,18816077-18816631,
18816907-18817062
Length = 502
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +3
Query: 60 MSKNIVFEGWLTKSPPTKRIFRTKWQKRWFALRQSGELPGQYFLDY 197
++KN+ E +L+ PP++ FR++ + +G GQYF Y
Sbjct: 336 VAKNVA-EIFLSPIPPSRNDFRSRVAVEHYYAAGAGAASGQYFYSY 380
>04_04_1600 + 34704527-34704758,34705393-34706777
Length = 538
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = +1
Query: 448 QKPLHPTRTIRERLLMITIIALLKPLAHTYRFRNVSLACAIRTTKGTVPVLGI 606
+KPL T+ ++ + A L LAH R+ +A AI T G V +
Sbjct: 373 RKPLLYVSTVGMTACLVVLAATLAALAHGSASRSAGIAVAILTVCGDVAFFSV 425
>02_02_0421 -
10042184-10042197,10042442-10042822,10044158-10044261,
10044634-10044734,10044806-10045147,10045981-10046158,
10047696-10047776,10049190-10049449
Length = 486
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/20 (60%), Positives = 17/20 (85%), Gaps = 1/20 (5%)
Frame = +3
Query: 270 LHMER-SGNGTLDPKIRGSV 326
LH+E+ S NGTLDPK+ G++
Sbjct: 54 LHIEKTSHNGTLDPKVTGNL 73
>02_01_0559 - 4113937-4114113,4115305-4115853
Length = 241
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 293 WDFRSEDPWLSFHYSNSNENLSPRSRVRSGDGEVG 397
WDF S DP+ S H+ + + P + GD E G
Sbjct: 165 WDFVSWDPFSSLHHDHQQYTVRP-AAPSDGDDEEG 198
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,289,697
Number of Sequences: 37544
Number of extensions: 465986
Number of successful extensions: 1215
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1213
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -