Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0641
         (696 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.2  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   2.1  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   2.8  
EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.    22   4.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   4.8  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    22   4.8  
DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex det...    22   6.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   6.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   6.4  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   8.5  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
 Frame = +3

Query: 441  DRPEAVASYQNNTRAASNDHYHRASET-TGPYIPISECITGVRDQDDQRHGT 593
            +RPE V +   +   +        S+  T P  P+S    G RD+D  R  T
Sbjct: 1367 ERPERVPTVDLSPSPSDRGRNDDGSDRLTSPPTPLSISRAGSRDEDSTRDST 1418


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +3

Query: 411 RVCGLRSTDDDRPEAVASYQNNTRAASNDHYHRASETT 524
           R+ GL   D++    +     ++ + S DHY R S +T
Sbjct: 16  RIQGLYLLDNNDSSGIPHSAESSASNSPDHYERFSPST 53


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -1

Query: 279 PCVNQHQPVRIN 244
           P V QHQPV +N
Sbjct: 253 PTVQQHQPVTVN 264


>EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.
          Length = 200

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 213 NFGLNSSLGNTDPGARPIVAKR 148
           +FG   SLGN DP    IV+ R
Sbjct: 86  DFGDVDSLGNLDPANEFIVSTR 107


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/47 (21%), Positives = 25/47 (53%)
 Frame = +3

Query: 156 RQSGELPGQYFLDYYSDRNCRRHKGTINLDLCEQVDAGLHMERSGNG 296
           + +G+ PG Y     S+ +     GT++++  ++ + G ++  + NG
Sbjct: 714 KAAGDTPGDYTDLKLSNPDISVEDGTLSINNIQKTNEGYYLCEAVNG 760


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 213 NFGLNSSLGNTDPGARPIVAKR 148
           +FG   SLGN DP    IV+ R
Sbjct: 102 DFGDVDSLGNLDPANEFIVSTR 123


>DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 469 RTIRERLLMITIIALLKPLAHTYRFRN 549
           RT RER     II+   PL++ Y + N
Sbjct: 70  RTERERSKEPKIISNNNPLSNNYNYNN 96


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 480  RAASNDHYHRASETTGPYIPISE 548
            RA S+  YH  S T+    P+SE
Sbjct: 1812 RAVSDFIYHGTSSTSSDISPMSE 1834


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 480  RAASNDHYHRASETTGPYIPISE 548
            RA S+  YH  S T+    P+SE
Sbjct: 1808 RAVSDFIYHGTSSTSSDISPMSE 1830


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/24 (29%), Positives = 12/24 (50%)
 Frame = +3

Query: 123 RTKWQKRWFALRQSGELPGQYFLD 194
           +T W K W   R+ G   G+  ++
Sbjct: 207 KTPWYKGWKVERKDGNADGKTLIE 230


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,964
Number of Sequences: 438
Number of extensions: 5126
Number of successful extensions: 14
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)