Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0640
         (538 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25H1.06 |||histone acetyltransferase complex subunit |Schizo...    26   3.1  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    26   3.1  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    26   3.1  
SPAC29A4.20 |||RNA polymerase II elongator complex, histone acet...    25   7.2  
SPAC821.12 |orb6||serine/threonine protein kinase Orb6|Schizosac...    25   7.2  
SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ...    25   7.2  

>SPAC25H1.06 |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 408

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = +1

Query: 7   LPSELRRQSW-LRRTNQKGMD*-EDGSQKRLVFNKRYALGGRRISTALQLSGR 159
           L SE   Q W LR  N+   +  ED S  RL    R  LGG  +S + + SGR
Sbjct: 293 LGSEQDLQLWDLRNLNKSVFNTSEDLSDNRLKVPSRLTLGGTSLSWSWRHSGR 345


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 329  VVHTMFCHNFIFNRPQCISRKNIMYFM 249
            V    FC NF   R    +R+NI YF+
Sbjct: 1364 VARQTFCTNFYVLRETSTARENIFYFL 1390


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 329  VVHTMFCHNFIFNRPQCISRKNIMYFM 249
            V    FC NF   R    +R+NI YF+
Sbjct: 1364 VARQTFCTNFYVLRETSTARENIFYFL 1390


>SPAC29A4.20 |||RNA polymerase II elongator complex, histone
           acetyltransferase subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 544

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = +3

Query: 3   NTAFRTTAAKLAPSNKSKGNGL-RRWK 80
           N AFRT   KL P+   +G GL   WK
Sbjct: 304 NPAFRTDGLKLYPTLVIRGTGLYELWK 330


>SPAC821.12 |orb6||serine/threonine protein kinase
           Orb6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 469

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +2

Query: 44  EQIKREWIKKMEAKRDWFLTNDTRWAV 124
           E  KR+ +  ++A+RD  + +D+ W V
Sbjct: 128 EMFKRDQLAHVKAERDLLVESDSPWVV 154


>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 581

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 404 SEFRP*SLMLQELHSFT*FYFLVGDTHF 487
           S FR  + +L+ LH    FYF++   HF
Sbjct: 340 STFRSLNNLLEHLHQSFFFYFILDHLHF 367


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,252,326
Number of Sequences: 5004
Number of extensions: 43972
Number of successful extensions: 123
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)