Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0640
         (538 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0677 + 5087584-5087589,5088890-5089172,5093561-5093704,509...    29   3.1  
07_03_0724 + 20975942-20976867,20977397-20977476,20977976-209783...    27   9.5  
04_04_0706 + 27419215-27419371,27419521-27419734,27419818-274199...    27   9.5  
01_07_0022 - 40543912-40544004,40545060-40545229,40545850-405459...    27   9.5  

>07_01_0677 +
           5087584-5087589,5088890-5089172,5093561-5093704,
           5094167-5095269
          Length = 511

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +3

Query: 447 HLRSFIFWLGIHIFSSMDR*KPFSIIIF 530
           H R ++FW G+ ++SS +   P SII++
Sbjct: 95  HTRQWVFWGGVELWSSKNPAPPRSIILW 122


>07_03_0724 +
           20975942-20976867,20977397-20977476,20977976-20978370,
           20988410-20989444
          Length = 811

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = +2

Query: 80  AKRDWFLTNDTRWAVDESQRPSSCQDXGV 166
           A ++W +  D  WA++E+     C D  +
Sbjct: 68  ATKEWVMLPDANWAIEENHTACLCFDPAI 96


>04_04_0706 + 27419215-27419371,27419521-27419734,27419818-27419913,
            27420006-27420123,27420211-27420384,27420633-27420803,
            27420932-27420987,27421125-27421214,27421296-27421444,
            27421640-27421722,27421830-27421958,27422063-27422137,
            27422248-27422416,27422965-27423104,27423191-27423298,
            27423603-27423783,27424445-27424542,27424639-27424728,
            27424881-27425034,27425376-27425431,27425483-27425533,
            27425651-27425732,27425821-27425995,27426748-27426823,
            27426951-27427121,27427198-27427269,27427350-27427454,
            27427948-27428037,27428703-27428908,27428989-27429190,
            27429294-27429473,27429858-27429925,27430005-27430341,
            27430428-27430637,27430765-27431448,27431537-27431940,
            27432495-27432542,27432777-27433023,27433381-27433602,
            27433796-27434026
          Length = 2122

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 141  PPVVRTXEWTNSKIYRARSDRSLWTNYNRIKLIRLLHKVH 260
            P  +RT EW  S++ R+ S RS+       KL+  L + H
Sbjct: 1834 PLFLRTLEWAESEVDRSTSKRSMDRAIVFYKLVNSLAEKH 1873


>01_07_0022 -
           40543912-40544004,40545060-40545229,40545850-40545971,
           40549272-40550909,40553212-40553720
          Length = 843

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 237 IRLLHKVHYIFTRNALWAIENEIVTKHRMN 326
           ++ LH V ++F  + +W I N     H MN
Sbjct: 707 LQTLHGVQHLFLTSGIWGILNAQARLHNMN 736


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,806,697
Number of Sequences: 37544
Number of extensions: 256495
Number of successful extensions: 600
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 600
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)