Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0640
         (538 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32986| Best HMM Match : Ribosomal_S15 (HMM E-Value=7.2)             27   7.3  
SB_10406| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.3  
SB_1197| Best HMM Match : DUF1580 (HMM E-Value=6)                      27   7.3  
SB_48759| Best HMM Match : Ribosomal_S15 (HMM E-Value=8.1)             27   9.7  
SB_42350| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  

>SB_32986| Best HMM Match : Ribosomal_S15 (HMM E-Value=7.2)
          Length = 331

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -3

Query: 530 KNNNGKWFLPIHARKNVYPQPENK 459
           KN NG W  P+  R N    P+NK
Sbjct: 76  KNENGNWEAPLPFRANEVHLPDNK 99


>SB_10406| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 268

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 8/32 (25%), Positives = 15/32 (46%)
 Frame = +2

Query: 92  WFLTNDTRWAVDESQRPSSCQDXGVDKLKDLP 187
           WF     +W  DE Q+   C     + ++++P
Sbjct: 217 WFQNRRMKWKKDEKQKTEDCYSAHQENIEEIP 248


>SB_1197| Best HMM Match : DUF1580 (HMM E-Value=6)
          Length = 282

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -3

Query: 530 KNNNGKWFLPIHARKNVYPQPENK 459
           KN NG W  P+  R N    P+NK
Sbjct: 224 KNENGNWEAPLPFRANEVHLPDNK 247


>SB_48759| Best HMM Match : Ribosomal_S15 (HMM E-Value=8.1)
          Length = 337

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -3

Query: 530 KNNNGKWFLPIHARKNVYPQPENK 459
           KN NG W  P+  R N    P+NK
Sbjct: 117 KNENGNWEAPLPFRANDVHLPDNK 140


>SB_42350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 414

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -3

Query: 389 LITKIVNTLLNHASHLFSSFVVHTMFCHNF 300
           L+   ++++L    H F S  +H++FC NF
Sbjct: 277 LVGARIHSILGVRIHSFVSVRIHSLFCRNF 306


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,069,011
Number of Sequences: 59808
Number of extensions: 296185
Number of successful extensions: 808
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1215643300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)