Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0640
         (538 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf famil...    31   0.53 
AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical...    31   0.53 
U50193-10|AAP68919.1| 1098|Caenorhabditis elegans Hypothetical p...    28   4.9  
U50193-9|AAA91253.2| 1332|Caenorhabditis elegans Hypothetical pr...    28   4.9  
AF068709-13|AAO26012.1|  321|Caenorhabditis elegans Serpentine r...    27   6.5  

>AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf family
           ATPase protein.
          Length = 2395

 Score = 31.1 bits (67), Expect = 0.53
 Identities = 19/63 (30%), Positives = 37/63 (58%), Gaps = 6/63 (9%)
 Frame = +2

Query: 11  LQNYGGKAGSVEQIKREWIKKMEAKRDWFLTNDTRWAVDES-----QRPS-SCQDXGVDK 172
           L+ YG     +E++KRE +++ +A+++    N+ +  +DES     Q+PS S  D   ++
Sbjct: 428 LKAYGLTQEDLEEMKREKLEEQKARKEACGDNEEKMEIDESPSSDAQKPSTSSSDLTAEQ 487

Query: 173 LKD 181
           L+D
Sbjct: 488 LQD 490


>AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical
           protein Y111B2A.22 protein.
          Length = 2395

 Score = 31.1 bits (67), Expect = 0.53
 Identities = 19/63 (30%), Positives = 37/63 (58%), Gaps = 6/63 (9%)
 Frame = +2

Query: 11  LQNYGGKAGSVEQIKREWIKKMEAKRDWFLTNDTRWAVDES-----QRPS-SCQDXGVDK 172
           L+ YG     +E++KRE +++ +A+++    N+ +  +DES     Q+PS S  D   ++
Sbjct: 428 LKAYGLTQEDLEEMKREKLEEQKARKEACGDNEEKMEIDESPSSDAQKPSTSSSDLTAEQ 487

Query: 173 LKD 181
           L+D
Sbjct: 488 LQD 490


>U50193-10|AAP68919.1| 1098|Caenorhabditis elegans Hypothetical
            protein ZK328.7b protein.
          Length = 1098

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 331  KEENKWEA*LRSVLTILVINPH 396
            KEENKW   L+   T++ ++PH
Sbjct: 939  KEENKWTLVLQPCQTVIQVDPH 960


>U50193-9|AAA91253.2| 1332|Caenorhabditis elegans Hypothetical protein
            ZK328.7a protein.
          Length = 1332

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 331  KEENKWEA*LRSVLTILVINPH 396
            KEENKW   L+   T++ ++PH
Sbjct: 939  KEENKWTLVLQPCQTVIQVDPH 960


>AF068709-13|AAO26012.1|  321|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 56 protein.
          Length = 321

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -3

Query: 185 VDL*VCPLLRPDNWRAVEIRRPPSAYRLLKTNLFWLPS 72
           VDL    ++  + W A+ + + PS   LLK   +++PS
Sbjct: 65  VDLLTNMIIYANTWTAIRLEKQPSCIFLLKLVEYYIPS 102


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,329,189
Number of Sequences: 27780
Number of extensions: 241428
Number of successful extensions: 543
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)