Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0640
         (538 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   2.0  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   2.0  
DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    21   8.0  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    21   8.0  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    21   8.0  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    21   8.0  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    21   8.0  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   8.0  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   8.0  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +3

Query: 126 TNLNGPPVVRTXEWTNSKIYRARSDRSLWTNYNRI 230
           T  NG P  +   W+N  IY+ +  R +    +RI
Sbjct: 300 TYSNGLPFPQRPIWSNFPIYKYKYIREIMNKESRI 334


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +3

Query: 126 TNLNGPPVVRTXEWTNSKIYRARSDRSLWTNYNRI 230
           T  NG P  +   W+N  IY+ +  R +    +RI
Sbjct: 300 TYSNGLPFPQRPIWSNFPIYKYKYIREIMNKESRI 334


>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +3

Query: 177 KIYRARSDRSLWTNYNRIKLIRLLHKVHYI 266
           KI  + S+   ++NYN     +L + ++YI
Sbjct: 80  KIISSLSNNYNYSNYNNNNYKQLCYNINYI 109


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +3

Query: 177 KIYRARSDRSLWTNYNRIKLIRLLHKVHYI 266
           KI  + S+   ++NYN     +L + ++YI
Sbjct: 80  KIISSLSNNYNYSNYNNNNYKQLCYNINYI 109


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +3

Query: 177 KIYRARSDRSLWTNYNRIKLIRLLHKVHYI 266
           KI  + S+   ++NYN     +L + ++YI
Sbjct: 80  KIISSLSNNYNYSNYNNNNYKQLCYNINYI 109


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +3

Query: 177 KIYRARSDRSLWTNYNRIKLIRLLHKVHYI 266
           KI  + S+   ++NYN     +L + ++YI
Sbjct: 80  KIISSLSNNYNYSNYNNNNYKQLCYNINYI 109


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +3

Query: 177 KIYRARSDRSLWTNYNRIKLIRLLHKVHYI 266
           KI  + S+   ++NYN     +L + ++YI
Sbjct: 80  KIISSLSNNYNYSNYNNNNYKQLCYNINYI 109


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +3

Query: 27  AKLAPSNKSKGNGLRRW 77
           ++L P  ++KGNG+  W
Sbjct: 469 SELVPYLENKGNGVYAW 485


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = +3

Query: 228 IKLIRLLHKVHYIFTRNALWAIENEIVTKHRMNNE 332
           I +++ L   H   ++     +EN+ +TK  + NE
Sbjct: 104 INVVKYLGGKHKFISKKIKKTMENKDITKRPLPNE 138


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,800
Number of Sequences: 438
Number of extensions: 3025
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15213684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)