Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0640
         (538 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g59810.1 68418.m07499 subtilase family protein subtilisin-lik...    28   4.5  
At4g38540.1 68417.m05456 monooxygenase, putative (MO2) identical...    27   6.0  
At1g55880.2 68414.m06409 pyridoxal-5'-phosphate-dependent enzyme...    27   6.0  
At1g55880.1 68414.m06408 pyridoxal-5'-phosphate-dependent enzyme...    27   6.0  
At1g53020.1 68414.m06002 ubiquitin-conjugating enzyme family pro...    27   6.0  
At4g28490.1 68417.m04076 leucine-rich repeat transmembrane prote...    27   7.9  
At1g69670.1 68414.m08018 cullin, putative contains similarity to...    27   7.9  

>At5g59810.1 68418.m07499 subtilase family protein subtilisin-like
           protease AIR3, Arabidopsis thaliana, EMBL:AF098632
          Length = 778

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +3

Query: 288 AIENEIVTKHRMNNERRK*MGSMIEKRINNFSY 386
           AI + I+T  R  N RRK M     K+ N FSY
Sbjct: 591 AIRSAIMTTSRTRNNRRKPMVDESFKKANPFSY 623


>At4g38540.1 68417.m05456 monooxygenase, putative (MO2) identical to
           GI:3426064
          Length = 407

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +2

Query: 92  WFLTNDTRWAVDESQRPSSCQDXGVDKLKDLPGSFRSL 205
           WFLT+ T   +DE       ++  ++K+KDLP + +++
Sbjct: 218 WFLTH-TSTDIDEETNSEILKEFVLNKIKDLPENIKNV 254


>At1g55880.2 68414.m06409 pyridoxal-5'-phosphate-dependent enzyme,
           beta family protein similar to SP|P50867 Cysteine
           synthase (EC 4.2.99.8) (O-acetylserine sulfhydrylase)
           (O-acetylserine (Thiol)-lyase) [Aspergillus nidulans]
           {Emericella nidulans}; contains Pfam profile PF00291:
           Pyridoxal-phosphate dependent enzyme
          Length = 348

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/54 (22%), Positives = 28/54 (51%)
 Frame = +3

Query: 171 NSKIYRARSDRSLWTNYNRIKLIRLLHKVHYIFTRNALWAIENEIVTKHRMNNE 332
           ++ I +++   +L  +  R++ + + HK HY+          NE+ +K R+ +E
Sbjct: 134 DAAIEKSQIIEALGASVERVRPVSITHKDHYVNIARRRADEANELASKRRLGSE 187


>At1g55880.1 68414.m06408 pyridoxal-5'-phosphate-dependent enzyme,
           beta family protein similar to SP|P50867 Cysteine
           synthase (EC 4.2.99.8) (O-acetylserine sulfhydrylase)
           (O-acetylserine (Thiol)-lyase) [Aspergillus nidulans]
           {Emericella nidulans}; contains Pfam profile PF00291:
           Pyridoxal-phosphate dependent enzyme
          Length = 421

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/54 (22%), Positives = 28/54 (51%)
 Frame = +3

Query: 171 NSKIYRARSDRSLWTNYNRIKLIRLLHKVHYIFTRNALWAIENEIVTKHRMNNE 332
           ++ I +++   +L  +  R++ + + HK HY+          NE+ +K R+ +E
Sbjct: 134 DAAIEKSQIIEALGASVERVRPVSITHKDHYVNIARRRADEANELASKRRLGSE 187


>At1g53020.1 68414.m06002 ubiquitin-conjugating enzyme family
           protein similar to ubiquitin-conjugating enzyme
           GB:3319990 from [Mus musculus]; contains Pfam profile
           PF00179: Ubiquitin-conjugating enzyme
          Length = 1163

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 17  NYGGKAGSVEQIKREWIKKMEAKRDW-FLTNDTRWAV 124
           +Y  K  S +Q  + W+KK++A  DW  L ND   A+
Sbjct: 257 HYASKGKSSKQHSKNWVKKVQA--DWKILENDLPEAI 291


>At4g28490.1 68417.m04076 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 999

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 14/54 (25%), Positives = 23/54 (42%)
 Frame = -3

Query: 437 LEASMIKVEIPTT**GLITKIVNTLLNHASHLFSSFVVHTMFCHNFIFNRPQCI 276
           L ++    EIP     L   ++N   NH S        + ++ H+FI N   C+
Sbjct: 554 LSSNQFSGEIPLELQNLKLNVLNLSYNHLSGKIPPLYANKIYAHDFIGNPGLCV 607


>At1g69670.1 68414.m08018 cullin, putative contains similarity to
           Cullin homolog 3 (CUL-3) SP:Q13618, GI:3639052 from
           [Homo sapiens]; contains Pfam profile PF00888: Cullin
           family
          Length = 732

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 2   KYCLQNYGGKAGSVEQIKREWIKKMEAKRDWFLTND 109
           K CLQ+     G    +++E + K  A+ DWF+ ND
Sbjct: 594 KRCLQSMACVKGK-NVLRKEPMSKEIAEEDWFVVND 628


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,467,990
Number of Sequences: 28952
Number of extensions: 218041
Number of successful extensions: 487
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 993966856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)