Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0638
         (529 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0WWS3 Cluster: Putative uncharacterized protein; n=1; ...    35   1.0  
UniRef50_UPI0000D5755E Cluster: PREDICTED: similar to ribosomal ...    33   5.4  
UniRef50_UPI0000D566B0 Cluster: PREDICTED: hypothetical protein;...    32   9.4  
UniRef50_Q18156 Cluster: Putative uncharacterized protein; n=2; ...    32   9.4  

>UniRef50_Q0WWS3 Cluster: Putative uncharacterized protein; n=1;
           Arabidopsis thaliana|Rep: Putative uncharacterized
           protein - Arabidopsis thaliana (Mouse-ear cress)
          Length = 80

 Score = 35.1 bits (77), Expect = 1.0
 Identities = 22/59 (37%), Positives = 27/59 (45%)
 Frame = +1

Query: 13  MKNAVNCAS*CELQDTFEHRHFERTLRSVETHPGPLLSEGRLHKKH*SHCVAGAALVIR 189
           MKN   C + CELQ+   HR FER LR   +  G +       +   S   AG  LV R
Sbjct: 1   MKNVAKCDTWCELQNPVNHRVFERKLRPKPSGRGHVCLGVTNRRPSPSFADAGRKLVSR 59


>UniRef50_UPI0000D5755E Cluster: PREDICTED: similar to ribosomal
            protein S6 kinase, 90kDa, polypeptide 5 isoform a; n=2;
            Endopterygota|Rep: PREDICTED: similar to ribosomal
            protein S6 kinase, 90kDa, polypeptide 5 isoform a -
            Tribolium castaneum
          Length = 928

 Score = 32.7 bits (71), Expect = 5.4
 Identities = 22/76 (28%), Positives = 40/76 (52%)
 Frame = -3

Query: 482  SSILNND*YNVNNRITKPRRQKFIYTRTRYAHAKHNARAREVRRDYENFEITIKHF*IRR 303
            S I+ +D  +V+ ++   +RQK +Y +TR++      + +E+  D     + +KH   R+
Sbjct: 840  SGIVMSDKNSVDTKVVGRKRQKKVYVQTRWSERIRRRQRQEIDLD----PVPVKHNRKRK 895

Query: 302  RDELAKRDS*S*SSVR 255
             DE    +S S SS R
Sbjct: 896  VDERESIESTSSSSKR 911


>UniRef50_UPI0000D566B0 Cluster: PREDICTED: hypothetical protein;
           n=1; Tribolium castaneum|Rep: PREDICTED: hypothetical
           protein - Tribolium castaneum
          Length = 243

 Score = 31.9 bits (69), Expect = 9.4
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = -3

Query: 140 CSRPSDRSGPGCVSTDRNVRSKCRCSNVSCSSHYDAQLTAFFIDP 6
           C  P   +GPG  S    V +K  C+N SC+++Y+ + T F   P
Sbjct: 83  CEAPLVCNGPGKYSV---VPTKTDCNNDSCNNYYECEATWFLFVP 124


>UniRef50_Q18156 Cluster: Putative uncharacterized protein; n=2;
           Caenorhabditis|Rep: Putative uncharacterized protein -
           Caenorhabditis elegans
          Length = 145

 Score = 31.9 bits (69), Expect = 9.4
 Identities = 22/67 (32%), Positives = 28/67 (41%), Gaps = 7/67 (10%)
 Frame = -3

Query: 245 NKTTRNDEYERVTRNASTRRITSAAPATQC--D*CF-----LCSRPSDRSGPGCVSTDRN 87
           N     D Y R T+N   RR+   A  ++C  D  F     LC    D   P     DR 
Sbjct: 49  NACVCKDGYVRNTKNDCVRRLECTAETSRCPEDEVFQTCGTLCQPTCDDPYPTSCEHDRC 108

Query: 86  VRSKCRC 66
           +R+ CRC
Sbjct: 109 IRNVCRC 115


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 459,441,016
Number of Sequences: 1657284
Number of extensions: 8436358
Number of successful extensions: 20620
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 20019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20604
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 33455602480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)