Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0638
(529 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U50311-8|AAA92312.1| 145|Caenorhabditis elegans Hypothetical pr... 32 0.29
AF040652-7|AAB95017.1| 210|Caenorhabditis elegans Hypothetical ... 30 0.89
Z83120-9|CAB05589.2| 773|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z81515-11|CAB04199.2| 773|Caenorhabditis elegans Hypothetical p... 30 1.2
AF011893-1|AAC27124.1| 773|Caenorhabditis elegans maternal-effe... 30 1.2
Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical pr... 28 4.8
Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical pr... 28 4.8
Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical p... 28 4.8
Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical p... 28 4.8
U42839-7|AAC69012.1| 1722|Caenorhabditis elegans Drosophila crum... 27 6.3
AF022982-3|AAB69932.1| 670|Caenorhabditis elegans Hypothetical ... 27 6.3
AF067948-6|AAC17701.1| 337|Caenorhabditis elegans Seven tm rece... 27 8.3
>U50311-8|AAA92312.1| 145|Caenorhabditis elegans Hypothetical
protein C25E10.7 protein.
Length = 145
Score = 31.9 bits (69), Expect = 0.29
Identities = 22/67 (32%), Positives = 28/67 (41%), Gaps = 7/67 (10%)
Frame = -3
Query: 245 NKTTRNDEYERVTRNASTRRITSAAPATQC--D*CF-----LCSRPSDRSGPGCVSTDRN 87
N D Y R T+N RR+ A ++C D F LC D P DR
Sbjct: 49 NACVCKDGYVRNTKNDCVRRLECTAETSRCPEDEVFQTCGTLCQPTCDDPYPTSCEHDRC 108
Query: 86 VRSKCRC 66
+R+ CRC
Sbjct: 109 IRNVCRC 115
>AF040652-7|AAB95017.1| 210|Caenorhabditis elegans Hypothetical
protein T05A8.6 protein.
Length = 210
Score = 30.3 bits (65), Expect = 0.89
Identities = 14/55 (25%), Positives = 26/55 (47%)
Frame = -3
Query: 209 TRNASTRRITSAAPATQCD*CFLCSRPSDRSGPGCVSTDRNVRSKCRCSNVSCSS 45
T A+T T+A T+ C + P+ P C + +++ + +NV C+S
Sbjct: 75 TPGATTVTTTTAPTTTKAPDCTTTTAPTTTKAPDCTTCSQDILTDPMLANVHCAS 129
>Z83120-9|CAB05589.2| 773|Caenorhabditis elegans Hypothetical
protein R06A4.7 protein.
Length = 773
Score = 29.9 bits (64), Expect = 1.2
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = -3
Query: 242 KTTRNDEYERVTRNASTRRITSAAPATQCD*CFLCSRPSDRSGPGCVSTDRNVRS-KCRC 66
K R D+ RN+ R+T+ P T C + P + + C + V S C+C
Sbjct: 503 KLIREDDMRDSQRNSEKVRMTAVTPITAC----RHAGPCNATAENCACRENGVCSYMCKC 558
Query: 65 SNVSCSSHY 39
+++CS +
Sbjct: 559 -DINCSQRF 566
>Z81515-11|CAB04199.2| 773|Caenorhabditis elegans Hypothetical
protein R06A4.7 protein.
Length = 773
Score = 29.9 bits (64), Expect = 1.2
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = -3
Query: 242 KTTRNDEYERVTRNASTRRITSAAPATQCD*CFLCSRPSDRSGPGCVSTDRNVRS-KCRC 66
K R D+ RN+ R+T+ P T C + P + + C + V S C+C
Sbjct: 503 KLIREDDMRDSQRNSEKVRMTAVTPITAC----RHAGPCNATAENCACRENGVCSYMCKC 558
Query: 65 SNVSCSSHY 39
+++CS +
Sbjct: 559 -DINCSQRF 566
>AF011893-1|AAC27124.1| 773|Caenorhabditis elegans maternal-effect
sterile 2 protein.
Length = 773
Score = 29.9 bits (64), Expect = 1.2
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = -3
Query: 242 KTTRNDEYERVTRNASTRRITSAAPATQCD*CFLCSRPSDRSGPGCVSTDRNVRS-KCRC 66
K R D+ RN+ R+T+ P T C + P + + C + V S C+C
Sbjct: 503 KLIREDDMRDSQRNSEKVRMTAVTPITAC----RHAGPCNATAENCACRENGVCSYMCKC 558
Query: 65 SNVSCSSHY 39
+++CS +
Sbjct: 559 -DINCSQRF 566
>Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical protein
F53B7.5b protein.
Length = 2892
Score = 27.9 bits (59), Expect = 4.8
Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 5/82 (6%)
Frame = -3
Query: 245 NKTTRNDEYERVTRNASTRRITSAAPATQCD*C--FLCS--RPSDRSGPGCVSTDRNVRS 78
N TT +T + T+ +QC C L PSD S G + + + +
Sbjct: 1375 NLTTSTPTTTTITSTSPRTTTTTIPTQSQCSKCANMLAKALNPSDGSYDGMIVLNHHTSA 1434
Query: 77 KCRCSNVSCSSHYDAQ-LTAFF 15
CR ++SC + + T FF
Sbjct: 1435 GCRRVDISCGPTLNTENATIFF 1456
>Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical protein
F53B7.5a protein.
Length = 3095
Score = 27.9 bits (59), Expect = 4.8
Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 5/82 (6%)
Frame = -3
Query: 245 NKTTRNDEYERVTRNASTRRITSAAPATQCD*C--FLCS--RPSDRSGPGCVSTDRNVRS 78
N TT +T + T+ +QC C L PSD S G + + + +
Sbjct: 1375 NLTTSTPTTTTITSTSPRTTTTTIPTQSQCSKCANMLAKALNPSDGSYDGMIVLNHHTSA 1434
Query: 77 KCRCSNVSCSSHYDAQ-LTAFF 15
CR ++SC + + T FF
Sbjct: 1435 GCRRVDISCGPTLNTENATIFF 1456
>Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical
protein F53B7.5b protein.
Length = 2892
Score = 27.9 bits (59), Expect = 4.8
Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 5/82 (6%)
Frame = -3
Query: 245 NKTTRNDEYERVTRNASTRRITSAAPATQCD*C--FLCS--RPSDRSGPGCVSTDRNVRS 78
N TT +T + T+ +QC C L PSD S G + + + +
Sbjct: 1375 NLTTSTPTTTTITSTSPRTTTTTIPTQSQCSKCANMLAKALNPSDGSYDGMIVLNHHTSA 1434
Query: 77 KCRCSNVSCSSHYDAQ-LTAFF 15
CR ++SC + + T FF
Sbjct: 1435 GCRRVDISCGPTLNTENATIFF 1456
>Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical
protein F53B7.5a protein.
Length = 3095
Score = 27.9 bits (59), Expect = 4.8
Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 5/82 (6%)
Frame = -3
Query: 245 NKTTRNDEYERVTRNASTRRITSAAPATQCD*C--FLCS--RPSDRSGPGCVSTDRNVRS 78
N TT +T + T+ +QC C L PSD S G + + + +
Sbjct: 1375 NLTTSTPTTTTITSTSPRTTTTTIPTQSQCSKCANMLAKALNPSDGSYDGMIVLNHHTSA 1434
Query: 77 KCRCSNVSCSSHYDAQ-LTAFF 15
CR ++SC + + T FF
Sbjct: 1435 GCRRVDISCGPTLNTENATIFF 1456
>U42839-7|AAC69012.1| 1722|Caenorhabditis elegans Drosophila crumbs
homolog protein 1 protein.
Length = 1722
Score = 27.5 bits (58), Expect = 6.3
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 6/44 (13%)
Frame = -3
Query: 158 CD*CFLCSRPSD-RSGPGCVSTDRNVRSKC-----RCSNVSCSS 45
C+ C S D SGP C+ D KC +CS VSC S
Sbjct: 472 CEDCVNSSNCLDVESGPVCICDDGYFGQKCDQKHDKCSKVSCPS 515
>AF022982-3|AAB69932.1| 670|Caenorhabditis elegans Hypothetical
protein T23B12.6 protein.
Length = 670
Score = 27.5 bits (58), Expect = 6.3
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -1
Query: 166 PRNVINVF-YAAGPQTGVVLDVSPRTAMCVRNVDVQMCPA 50
PR++IN+ Y+ GP +LDV +C + CP+
Sbjct: 627 PRSLINLSNYSGGPTPQELLDVIDDNDICCSTPSLSRCPS 666
>AF067948-6|AAC17701.1| 337|Caenorhabditis elegans Seven tm
receptor protein 30 protein.
Length = 337
Score = 27.1 bits (57), Expect = 8.3
Identities = 11/50 (22%), Positives = 26/50 (52%)
Frame = +3
Query: 321 FYCYFKIFIITSNLSGARVMFSVRVASSRVYEFLSSWFRYSVVDVVLIVI 470
F YF++ I+ N+S + M + S +Y+ S F + + ++++ +
Sbjct: 219 FRMYFRMNILLQNVSKSYEMIQRQFFKSLIYQITSPTFTFYIPAILILTV 268
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,762,522
Number of Sequences: 27780
Number of extensions: 205233
Number of successful extensions: 486
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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