Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0637
         (408 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8FFL3 Cluster: Putative uncharacterized protein; n=3; ...    35   0.55 
UniRef50_A2E925 Cluster: DHHC zinc finger domain containing prot...    33   2.9  

>UniRef50_Q8FFL3 Cluster: Putative uncharacterized protein; n=3;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli O6
          Length = 277

 Score = 35.1 bits (77), Expect = 0.55
 Identities = 23/76 (30%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
 Frame = +3

Query: 30  ISHIYLSGQKLDIYTLRR-GGDFCDWTHKFFGPGNFKIFHMFIGFGRCV--CFVFXXXXX 200
           + H++   +   I  LR   GDFCD    FF     K F   + F RCV  CF+      
Sbjct: 166 LDHLFYRQRTEGIAHLRTINGDFCDTVGGFFITNVLKTFGAVVPFNRCVKHCFIRINHIV 225

Query: 201 XXXXXXXXXAAVAVTP 248
                    A +A+TP
Sbjct: 226 SFSQKRKICARLAITP 241


>UniRef50_A2E925 Cluster: DHHC zinc finger domain containing
           protein; n=1; Trichomonas vaginalis G3|Rep: DHHC zinc
           finger domain containing protein - Trichomonas vaginalis
           G3
          Length = 302

 Score = 32.7 bits (71), Expect = 2.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 81  RGGDFCDWTHKFFGPGNFKIFHMFIGFG 164
           R   +CDW   F G  N+K+F++F  +G
Sbjct: 155 RPDHYCDWVASFVGKKNYKLFYLFNFYG 182


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 352,378,014
Number of Sequences: 1657284
Number of extensions: 6002664
Number of successful extensions: 11584
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 11375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11584
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 18196175969
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)