Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0637
         (408 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces p...    27   1.5  
SPAC3H8.03 |||mitochondrial ribosomal protein subunit Img2|Schiz...    25   6.0  
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    25   6.0  
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    24   7.9  
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    24   7.9  

>SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 506

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 12  DLKYLSISHIYLSGQKLDIYTLRRGGDFC 98
           DLK  + SH+ LS    +I  L+ G D C
Sbjct: 444 DLKLYANSHLGLSYDSFEIINLKTGKDIC 472


>SPAC3H8.03 |||mitochondrial ribosomal protein subunit
           Img2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 105

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = -2

Query: 110 MRPITKVSSSPQCIYVKLLTGQIYMRDG*ILQI 12
           +R I+ +  SP+ +YV  LT Q+ ++   I+ +
Sbjct: 64  LRLISTLKMSPKDVYVNKLTNQVVLKGNHIVTV 96


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1274

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 164  PKTNEHMKNFKISRTKKFMRPIT 96
            P T E  +N  +  TKK  +PIT
Sbjct: 954  PSTLERFRNVTLRLTKKLKKPIT 976


>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -1

Query: 102 NHKSLLLSSMY-ICQASDRTNIYERWIDTSDRM 7
           N   LL +++Y + QA   TN+ E W D ++ M
Sbjct: 88  NEGDLLQNAIYELSQAEGSTNVNEVWNDITEDM 120


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -2

Query: 152 EHMKNFKISRTKKFMRPITKVSSSPQCIYV-KLLTGQIYMR 33
           E  ++ K S T  F + + KVSSS  C    ++++GQ Y+R
Sbjct: 90  EEQQSLKRSDTSVFPKAVRKVSSSKICASCGQVISGQ-YVR 129


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,525,125
Number of Sequences: 5004
Number of extensions: 27451
Number of successful extensions: 47
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)