Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0637
(408 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40798-4|AAA81474.2| 430|Caenorhabditis elegans Hypothetical pr... 28 2.3
Z29121-6|CAH19096.1| 405|Caenorhabditis elegans Hypothetical pr... 27 3.9
Z29121-5|CAD54174.2| 403|Caenorhabditis elegans Hypothetical pr... 27 3.9
Z22180-12|CAH19086.1| 405|Caenorhabditis elegans Hypothetical p... 27 3.9
Z22180-11|CAD54147.2| 403|Caenorhabditis elegans Hypothetical p... 27 3.9
AC024753-1|AAF60456.1| 732|Caenorhabditis elegans Hypothetical ... 27 3.9
Z92781-5|CAB07179.2| 1391|Caenorhabditis elegans Hypothetical pr... 27 5.2
AF067612-5|AAM98011.3| 195|Caenorhabditis elegans Egg laying de... 27 5.2
Z81486-5|CAB03987.1| 570|Caenorhabditis elegans Hypothetical pr... 27 6.9
AL110500-21|CAI79283.1| 197|Caenorhabditis elegans Hypothetical... 27 6.9
AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical ... 26 9.1
>U40798-4|AAA81474.2| 430|Caenorhabditis elegans Hypothetical
protein R13A1.3 protein.
Length = 430
Score = 28.3 bits (60), Expect = 2.3
Identities = 12/46 (26%), Positives = 20/46 (43%)
Frame = +3
Query: 18 KYLSISHIYLSGQKLDIYTLRRGGDFCDWTHKFFGPGNFKIFHMFI 155
K S+ L +++D+YT G D+ W + FH +I
Sbjct: 252 KMKSLFEDVLYSEEIDVYTFLDGNDYSSWIRAAIIGSSLLFFHSYI 297
>Z29121-6|CAH19096.1| 405|Caenorhabditis elegans Hypothetical
protein ZK757.4b protein.
Length = 405
Score = 27.5 bits (58), Expect = 3.9
Identities = 9/27 (33%), Positives = 14/27 (51%)
Frame = +3
Query: 96 CDWTHKFFGPGNFKIFHMFIGFGRCVC 176
C W + GN+K F +F+ +G C
Sbjct: 164 CPWVNNCVNFGNYKYFILFLAYGFIFC 190
>Z29121-5|CAD54174.2| 403|Caenorhabditis elegans Hypothetical
protein ZK757.4a protein.
Length = 403
Score = 27.5 bits (58), Expect = 3.9
Identities = 9/27 (33%), Positives = 14/27 (51%)
Frame = +3
Query: 96 CDWTHKFFGPGNFKIFHMFIGFGRCVC 176
C W + GN+K F +F+ +G C
Sbjct: 162 CPWVNNCVNFGNYKYFILFLAYGFIFC 188
>Z22180-12|CAH19086.1| 405|Caenorhabditis elegans Hypothetical
protein ZK757.4b protein.
Length = 405
Score = 27.5 bits (58), Expect = 3.9
Identities = 9/27 (33%), Positives = 14/27 (51%)
Frame = +3
Query: 96 CDWTHKFFGPGNFKIFHMFIGFGRCVC 176
C W + GN+K F +F+ +G C
Sbjct: 164 CPWVNNCVNFGNYKYFILFLAYGFIFC 190
>Z22180-11|CAD54147.2| 403|Caenorhabditis elegans Hypothetical
protein ZK757.4a protein.
Length = 403
Score = 27.5 bits (58), Expect = 3.9
Identities = 9/27 (33%), Positives = 14/27 (51%)
Frame = +3
Query: 96 CDWTHKFFGPGNFKIFHMFIGFGRCVC 176
C W + GN+K F +F+ +G C
Sbjct: 162 CPWVNNCVNFGNYKYFILFLAYGFIFC 188
>AC024753-1|AAF60456.1| 732|Caenorhabditis elegans Hypothetical
protein Y23H5B.6 protein.
Length = 732
Score = 27.5 bits (58), Expect = 3.9
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -2
Query: 152 EHMKNFKISRTKKFMRPITKVSSSPQCIYVKL 57
E + N IS+TK + +TKVS++ + + KL
Sbjct: 579 EKISNITISKTKPLKKAVTKVSAAKKILNKKL 610
>Z92781-5|CAB07179.2| 1391|Caenorhabditis elegans Hypothetical
protein F09C3.1 protein.
Length = 1391
Score = 27.1 bits (57), Expect = 5.2
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -2
Query: 311 SEIRNELTERTCRRISYAYVSRC 243
SE+ ++ ER RI+Y Y+ RC
Sbjct: 26 SEVLEDVDERRLNRIAYEYLCRC 48
>AF067612-5|AAM98011.3| 195|Caenorhabditis elegans Egg laying
defective protein 4,isoform d protein.
Length = 195
Score = 27.1 bits (57), Expect = 5.2
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 254 HMRNLCDGMFVRLVHF*FQNETIKRTNAPVRSVVY 358
H RN+ DG +V +H F+ + R P R++ Y
Sbjct: 49 HRRNVDDGYYVEEIH--FEPPQVVRKKQPTRNLFY 81
>Z81486-5|CAB03987.1| 570|Caenorhabditis elegans Hypothetical
protein C53A5.6 protein.
Length = 570
Score = 26.6 bits (56), Expect = 6.9
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +1
Query: 85 EETFVIGRINFLVLEILKFFICSLVLGVA 171
EE F I IN+ VLE++K F GVA
Sbjct: 51 EEAFAITTINYQVLELIKHFKSMQSGGVA 79
>AL110500-21|CAI79283.1| 197|Caenorhabditis elegans Hypothetical
protein Y87G2A.20 protein.
Length = 197
Score = 26.6 bits (56), Expect = 6.9
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +3
Query: 312 MKQSNGRMHLFVQSFTSFCTFRAPF 386
M + GRM LF S CT R PF
Sbjct: 158 MSSAEGRMKLFKDSERPTCTSRGPF 182
>AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical
protein F55F10.1 protein.
Length = 4368
Score = 26.2 bits (55), Expect = 9.1
Identities = 7/17 (41%), Positives = 13/17 (76%)
Frame = +2
Query: 221 PKRCGRRNTVRHMRNLC 271
P+ CG+R+ + ++ NLC
Sbjct: 1666 PRNCGKRSVIENVANLC 1682
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,509,237
Number of Sequences: 27780
Number of extensions: 157897
Number of successful extensions: 362
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 362
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 651753158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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