Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0637
         (408 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    21   4.1  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    21   5.4  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    21   5.4  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    20   9.4  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    20   9.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    20   9.4  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -2

Query: 299 NELTERTCRRISYAYVSRCYGDRS 228
           N L E+T  R  YA+V    G RS
Sbjct: 464 NFLPEKTANRHYYAFVPFSAGPRS 487


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 120 QKIYASNHKSLLLSSMYICQASDRTNIY 37
           +K+Y +N+K L  +  YI Q      IY
Sbjct: 97  KKLYCNNYKKLYYNINYIEQIPIPVPIY 124


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 120 QKIYASNHKSLLLSSMYICQASDRTNIY 37
           +K+Y +N+K L  +  YI Q      IY
Sbjct: 97  KKLYCNNYKKLYYNINYIEQIPIPVPIY 124


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 6/34 (17%), Positives = 18/34 (52%)
 Frame = -1

Query: 132 NFQDQKIYASNHKSLLLSSMYICQASDRTNIYER 31
           +  +  ++ +NH ++L  S ++C+   +   + R
Sbjct: 275 HLDNHHVHHANHHAILGHSGFLCERHQKRYFFGR 308


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +3

Query: 120 GPGNFKIFHMFIGFGRCVC 176
           G G FKI  +F G G   C
Sbjct: 87  GLGVFKIAPIFKGIGYATC 105


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +3

Query: 120 GPGNFKIFHMFIGFGRCVC 176
           G G FKI  +F G G   C
Sbjct: 140 GLGVFKIAPIFKGIGYATC 158


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,707
Number of Sequences: 438
Number of extensions: 2165
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10256061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)