Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0637
         (408 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g63890.2 68418.m08022 histidinol dehydrogenase, putative / HD...    30   0.69 
At5g63890.1 68418.m08021 histidinol dehydrogenase, putative / HD...    30   0.69 
At3g56930.1 68416.m06332 zinc finger (DHHC type) family protein ...    27   3.7  
At2g30070.1 68415.m03658 potassium transporter (KUP1) identical ...    27   4.8  

>At5g63890.2 68418.m08022 histidinol dehydrogenase, putative / HDH,
           putative strong similarity to SP|P24226 Histidinol
           dehydrogenase, chloroplast precursor (EC 1.1.1.23) (HDH)
           {Brassica oleracea var.capitata}; contains Pfam profile
           PF00815: histidinol dehydrogenase
          Length = 466

 Score = 29.9 bits (64), Expect = 0.69
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +3

Query: 18  KYLSISHIYLSGQKLDIYTLRRGGDFCDWTHKFFGPGN 131
           K   ++HI  +G    I  +  G D C    K FGPGN
Sbjct: 203 KRAGVTHILKAGGAQAIAAMAWGTDSCPKVEKIFGPGN 240


>At5g63890.1 68418.m08021 histidinol dehydrogenase, putative / HDH,
           putative strong similarity to SP|P24226 Histidinol
           dehydrogenase, chloroplast precursor (EC 1.1.1.23) (HDH)
           {Brassica oleracea var.capitata}; contains Pfam profile
           PF00815: histidinol dehydrogenase
          Length = 452

 Score = 29.9 bits (64), Expect = 0.69
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +3

Query: 18  KYLSISHIYLSGQKLDIYTLRRGGDFCDWTHKFFGPGN 131
           K   ++HI  +G    I  +  G D C    K FGPGN
Sbjct: 189 KRAGVTHILKAGGAQAIAAMAWGTDSCPKVEKIFGPGN 226


>At3g56930.1 68416.m06332 zinc finger (DHHC type) family protein low
           similarity to Golgi-specific DHHC zinc figer protein
           [Mus musculus] GI:21728103; contains Pfam profile
           PF01529: DHHC zinc finger domain
          Length = 477

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +3

Query: 75  LRRGGDFCDWTHKFFGPGNFKIFHMFIGFGRCVC-FVF 185
           ++R    C W  +  G  N++ F MFI     +C +VF
Sbjct: 169 VQRFDHHCPWVGQCIGVRNYRFFFMFISTSTTLCIYVF 206


>At2g30070.1 68415.m03658 potassium transporter (KUP1) identical to
           potassium transporter [Arabidopsis thaliana]
           gi|2654088|gb|AAB87687; KUP/HAK/KT Transporter family
           member, PMID:11500563
          Length = 712

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +1

Query: 34  LIYICPVRSLTYIH*GEEETFVIGRI 111
           L+++C V+S+   + GEEE FVI R+
Sbjct: 561 LVFVC-VKSVQVPYVGEEERFVISRV 585


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,783,233
Number of Sequences: 28952
Number of extensions: 140641
Number of successful extensions: 322
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 322
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 605614832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)