Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0636
         (645 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr 1||...    27   3.1  
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    25   7.1  
SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ...    25   7.1  
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    25   9.3  
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe...    25   9.3  

>SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 113

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 7/57 (12%)
 Frame = -3

Query: 445 QCSKNY----CSDSKSISK---WRRKRIYFFSVIC*DCRNHLKDKSV*CNFIFEYCN 296
           QC K Y    C D  +      WR+ + +   VIC  C+N L  +        +YCN
Sbjct: 39  QCEKFYACFQCHDELNTHPFLPWRKAKFHIPCVICGACKNSLTVEEYRSTVHCKYCN 95


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -2

Query: 224 PVTPSPTSCLTWASPPPCLIEKE 156
           P TP P S L   S PP  +E E
Sbjct: 200 PSTPQPASSLPIPSSPPAALETE 222


>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 581

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
 Frame = -3

Query: 475 VIIV*VGAVLQCSKNYCSDSKSISKWRRKRIYFFSVIC*DCRNHLKDKSV*CN-FIFEYC 299
           ++I+    +L   +++ +  K I  WR    + FS+ C     +L   S     FIF Y 
Sbjct: 377 ILILAASFMLGAYRHWINHEKKIDLWRPFSFWLFSIFCTIAAYYLVSSSTKITVFIFLYL 436

Query: 298 NTT 290
             T
Sbjct: 437 MLT 439


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1639

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -3

Query: 409  ISKWRRKRIYFFSVIC*DCRNHLKDKSV*CNFIFEY 302
            + +W+R++  F+S+I  D +  + D    CN I +Y
Sbjct: 1542 VEEWKREKPNFYSLILMDLQMPVMDGYQACNEIRKY 1577


>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 181 GDAHVRHEVGDGVTGPPHAACSEEHE 258
           GD   R+E+   + GPP+ A  +E E
Sbjct: 2   GDFQSRYEILAAIMGPPNTASFKEEE 27


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,578,712
Number of Sequences: 5004
Number of extensions: 51860
Number of successful extensions: 114
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)