Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0636
         (645 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0189 + 13928680-13928848,13929005-13929267,13929365-13929985     29   2.4  
01_06_1762 - 39716723-39717016,39717256-39717332,39717452-397174...    29   4.2  
11_03_0027 + 9078792-9079613                                           28   7.3  
10_08_0295 - 16581014-16583071                                         27   9.7  
05_01_0137 + 917533-917814,918080-918352                               27   9.7  
01_01_0596 + 4435643-4436664,4437241-4437766                           27   9.7  

>10_07_0189 + 13928680-13928848,13929005-13929267,13929365-13929985
          Length = 350

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = -2

Query: 242 QAA*GGPVTPSPTSCLTWASPP-PCLIE 162
           Q A G    PSP+ C  WA PP P  +E
Sbjct: 230 QFANGAAAAPSPSGCWPWAPPPTPSAVE 257


>01_06_1762 -
           39716723-39717016,39717256-39717332,39717452-39717498,
           39717953-39718053,39718271-39718360,39718556-39720133
          Length = 728

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -2

Query: 248 SEQAA*GGPVTPSPTSCLTWASPPP 174
           S +AA   PVTPS   C +W   PP
Sbjct: 447 SPRAAHSAPVTPSSAGCRSWGIWPP 471


>11_03_0027 + 9078792-9079613
          Length = 273

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 17/42 (40%), Positives = 24/42 (57%)
 Frame = -2

Query: 263 SSSCSSEQAA*GGPVTPSPTSCLTWASPPPCLIEKENICLAE 138
           SSS ++  +    PVTP+P   +T +SPPP  +E     LAE
Sbjct: 55  SSSVTTTASTPNSPVTPAP---VTASSPPPPSLELLGAQLAE 93


>10_08_0295 - 16581014-16583071
          Length = 685

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 202 EVGDGVTGPPHAACSEEHELDNIPLTETS 288
           E+ D   GPPH  CS    +  +P +++S
Sbjct: 224 EMEDWTPGPPHPPCSPSSGVSGLPSSDSS 252


>05_01_0137 + 917533-917814,918080-918352
          Length = 184

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = -2

Query: 239 AA*GGPVT--PSPTSCLTWASPPPCLIEKENICLAETP 132
           AA   P T  P+PT+  T + PPP    + + C   TP
Sbjct: 49  AASASPTTSSPAPTTTTTTSPPPPPSFRRRSFCRRCTP 86


>01_01_0596 + 4435643-4436664,4437241-4437766
          Length = 515

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 19/68 (27%), Positives = 29/68 (42%)
 Frame = -3

Query: 385 IYFFSVIC*DCRNHLKDKSV*CNFIFEYCNTTRSSLSRECCQVRVPLNKRREAVP*HRPR 206
           + ++S +C   ++HL  KS    FI  Y N    +L     ++   +     A     P 
Sbjct: 273 VSYYSSVCYRAKDHLNLKSNCVYFIDSYSNLCAFNLENRTKEL---VEALEPAHAHGHPE 329

Query: 205 PHASRGRP 182
           PHA R RP
Sbjct: 330 PHAVRRRP 337


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,359,569
Number of Sequences: 37544
Number of extensions: 353532
Number of successful extensions: 955
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 943
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)