Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0636
         (645 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK057965-1|BAB71623.1|  624|Homo sapiens protein ( Homo sapiens ...    30   6.1  
AF428251-1|AAL30665.1| 1143|Homo sapiens partitioning-defective ...    30   6.1  
AF428250-1|AAL30664.1| 1205|Homo sapiens partitioning-defective ...    30   6.1  
AC007465-1|AAY24228.1|  184|Homo sapiens unknown protein.              30   6.1  
AB092439-1|BAC54285.1| 1205|Homo sapiens PAR3 beta alternatively...    30   6.1  
AB073472-1|BAC54035.1| 1104|Homo sapiens PAR3 beta protein.            30   6.1  
BC033133-1|AAH33133.1|  292|Homo sapiens LOC100049716 protein pr...    30   8.1  

>AK057965-1|BAB71623.1|  624|Homo sapiens protein ( Homo sapiens
           cDNA FLJ25236 fis, clone STM02096. ).
          Length = 624

 Score = 30.3 bits (65), Expect = 6.1
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = -3

Query: 289 RSSLSRECCQVRVPLNKRREAVP*HRPRPHASRGR 185
           + S S E  Q  V    R+  +P HRPRPH  RGR
Sbjct: 465 KKSSSLESLQTAVA-EVRKNDLPFHRPRPHMVRGR 498


>AF428251-1|AAL30665.1| 1143|Homo sapiens partitioning-defective
           3-like protein splice variant b protein.
          Length = 1143

 Score = 30.3 bits (65), Expect = 6.1
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = -3

Query: 289 RSSLSRECCQVRVPLNKRREAVP*HRPRPHASRGR 185
           + S S E  Q  V    R+  +P HRPRPH  RGR
Sbjct: 680 KKSSSLESLQTAVA-EVRKNDLPFHRPRPHMVRGR 713


>AF428250-1|AAL30664.1| 1205|Homo sapiens partitioning-defective
           3-like protein splice variant a protein.
          Length = 1205

 Score = 30.3 bits (65), Expect = 6.1
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = -3

Query: 289 RSSLSRECCQVRVPLNKRREAVP*HRPRPHASRGR 185
           + S S E  Q  V    R+  +P HRPRPH  RGR
Sbjct: 742 KKSSSLESLQTAVA-EVRKNDLPFHRPRPHMVRGR 775


>AC007465-1|AAY24228.1|  184|Homo sapiens unknown protein.
          Length = 184

 Score = 30.3 bits (65), Expect = 6.1
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = -3

Query: 289 RSSLSRECCQVRVPLNKRREAVP*HRPRPHASRGR 185
           + S S E  Q  V    R+  +P HRPRPH  RGR
Sbjct: 13  KKSSSLESLQTAVA-EVRKNDLPFHRPRPHMVRGR 46


>AB092439-1|BAC54285.1| 1205|Homo sapiens PAR3 beta alternatively
           spliced form protein.
          Length = 1205

 Score = 30.3 bits (65), Expect = 6.1
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = -3

Query: 289 RSSLSRECCQVRVPLNKRREAVP*HRPRPHASRGR 185
           + S S E  Q  V    R+  +P HRPRPH  RGR
Sbjct: 742 KKSSSLESLQTAVA-EVRKNDLPFHRPRPHMVRGR 775


>AB073472-1|BAC54035.1| 1104|Homo sapiens PAR3 beta protein.
          Length = 1104

 Score = 30.3 bits (65), Expect = 6.1
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = -3

Query: 289 RSSLSRECCQVRVPLNKRREAVP*HRPRPHASRGR 185
           + S S E  Q  V    R+  +P HRPRPH  RGR
Sbjct: 742 KKSSSLESLQTAVA-EVRKNDLPFHRPRPHMVRGR 775


>BC033133-1|AAH33133.1|  292|Homo sapiens LOC100049716 protein
           protein.
          Length = 292

 Score = 29.9 bits (64), Expect = 8.1
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +3

Query: 501 PRRGTKSPETRREGSHSCTSLLTGFDGR 584
           PR G K PE R  G H C S+     GR
Sbjct: 244 PRDGVKVPERRNHGLHCCLSISGSATGR 271


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,937,340
Number of Sequences: 237096
Number of extensions: 1984504
Number of successful extensions: 3626
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3626
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7141427170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)