Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0636
         (645 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g31500.1 68415.m03848 calcium-dependent protein kinase, putat...    30   1.1  
At1g52570.1 68414.m05935 phospholipase D alpha 2 / PLD alpha 2 (...    29   2.6  
At5g10720.1 68418.m01242 sensory transduction histidine kinase-r...    28   4.6  
At5g26910.1 68418.m03209 expressed protein                             27   8.1  

>At2g31500.1 68415.m03848 calcium-dependent protein kinase, putative
           / CDPK, putative similar to calcium-dependent protein
           kinase [Arabidopsis thaliana] gi|836942|gb|AAA67655;
           contains protein kinase domain, Pfam:PF00069; contains
           EF hand domain (calcium-binding EF-hand), Pfam:PF00036,
           INTERPRO:IPR002048
          Length = 582

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 516 KSPETRREGSHSCTSLLTGFDGRRNSFKGVVFSPP 620
           K P  RR  S+S TS +  FD   N  + ++F PP
Sbjct: 16  KRPVRRRHSSNSRTSSVPRFDSSTNLSRRLIFQPP 50


>At1g52570.1 68414.m05935 phospholipase D alpha 2 / PLD alpha 2
           (PLDALPHA2) (PLD2) / choline phosphatase 2 identical to
           phospholipase D alpha 2 ( PLD alpha 2) SP:Q9SSQ9 from
           [Arabidopsis thaliana]
          Length = 810

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +1

Query: 169 RQGGGDAHVR-HEVGDGVTGPPHAACSEEHELDNIPL 276
           RQGG D  V+  E+GD +  P     SE+H++ N+ L
Sbjct: 429 RQGGKDILVKMRELGDIIIPPSPVLFSEDHDVWNVQL 465


>At5g10720.1 68418.m01242 sensory transduction histidine
           kinase-related similar to Sensor protein rcsC (Capsular
           synthesis regulator component C) (SP:Q56128) {Salmonella
           typhi}; sensory transduction histidine kinase slr1759,
           Synechocystis sp., PIR:S75142
          Length = 950

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 14/24 (58%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
 Frame = +1

Query: 238 ACSEEHELDNIPLTETSVW-CCNI 306
           A +EEHE +   LTETSVW CC++
Sbjct: 518 ADTEEHEQNG--LTETSVWICCDV 539


>At5g26910.1 68418.m03209 expressed protein
          Length = 900

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
 Frame = +3

Query: 366 ITLKKY-ILLRRHFEIDFESLQ*FFEHCNTAPT*TMITCKSNRKRFPRRGTKSPETRREG 542
           I L+ Y +L+ + F++ F+ L  F    +  P   ++  + +       G  S   +R  
Sbjct: 58  IGLEDYAVLVLKIFKLKFDLLLVFVPEESKQPAQNLLKSRVSLIEVDEIGKSSSNNQRSD 117

Query: 543 SHSCTSLLTGFDGRRNSFKGVV 608
           S  C S +T  DG+      VV
Sbjct: 118 SSCCASSVTSDDGQGTRAPSVV 139


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,624,111
Number of Sequences: 28952
Number of extensions: 279498
Number of successful extensions: 648
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)