Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0635
         (784 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450 ...    24   1.6  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    22   6.4  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   6.4  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   6.4  

>EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450
           protein.
          Length = 493

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -2

Query: 570 IFQKEYN*KFT-RNAVYNTDIDLFNFNT*FAPLELKWLNLK 451
           +  K+++ KFT RN   N   D   F+T F   +  W NL+
Sbjct: 88  VLVKDFD-KFTNRNIATNESADPLAFHTLFISKDAVWRNLR 127


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +2

Query: 311 ICFSLEKDKCTLSVSFKSSAYPI 379
           IC++  K  C + +   S A+PI
Sbjct: 144 ICYAFGKFSCKVMIQSVSFAFPI 166


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +2

Query: 311 ICFSLEKDKCTLSVSFKSSAYPI 379
           IC++  K  C + +   S A+PI
Sbjct: 377 ICYAFGKFSCKVMIQSVSFAFPI 399


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +2

Query: 311 ICFSLEKDKCTLSVSFKSSAYPI 379
           IC++  K  C + +   S A+PI
Sbjct: 377 ICYAFGKFSCKVMIQSVSFAFPI 399


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,124
Number of Sequences: 336
Number of extensions: 3220
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21168876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)