Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0635
         (784 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18622| Best HMM Match : DUF229 (HMM E-Value=0.29)                   29   3.2  
SB_42271| Best HMM Match : DUF229 (HMM E-Value=0)                      29   5.6  

>SB_18622| Best HMM Match : DUF229 (HMM E-Value=0.29)
          Length = 307

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
 Frame = +2

Query: 176 DNEHPLQLLPNYNTGFIN*FSTFRIEAKRPTDLKT*I--LSAYKKYSICFSLEKDKCTLS 349
           D  + +Q + + N GF    ++ ++   +P+ LK  I  + AY K SIC  +++  CT  
Sbjct: 234 DTLYQIQFVTSPNEGFYE--ASIKLNNGKPS-LKGEISRVDAYGKQSICARIKRVSCTRR 290

Query: 350 VSFKSSAYPIV 382
           V   SSA+P++
Sbjct: 291 V---SSAFPVL 298


>SB_42271| Best HMM Match : DUF229 (HMM E-Value=0)
          Length = 591

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = -2

Query: 465 WLNLKFLFFYKRQKCNRRIVTF*FFDYVTIG*ALDLKETERVHLSFS 325
           W   K    YK  K N RI+T  F  Y T+   + +  T  V LS +
Sbjct: 479 WFRRKHWNMYKNLKFNSRILTSPFDIYATLKHIISIDRTATVRLSLN 525


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,283,012
Number of Sequences: 59808
Number of extensions: 338168
Number of successful extensions: 719
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2143884611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)