Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0635
         (784 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81528-5|CAB04287.1|  698|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z81117-5|CAB03321.1|  279|Caenorhabditis elegans Hypothetical pr...    29   5.0  
Z81553-9|CAB04500.2|  663|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z81104-10|CAB03214.1|  293|Caenorhabditis elegans Hypothetical p...    28   6.6  
Z81038-17|CAB76409.1|  381|Caenorhabditis elegans Hypothetical p...    28   6.6  
AL033510-11|CAA22071.1|  293|Caenorhabditis elegans Hypothetical...    28   6.6  
AL032656-5|CAB76732.1|  381|Caenorhabditis elegans Hypothetical ...    28   6.6  
Z81595-2|CAB04749.1|  527|Caenorhabditis elegans Hypothetical pr...    28   8.7  
Z81553-10|CAB04501.2|  668|Caenorhabditis elegans Hypothetical p...    28   8.7  
Z80215-8|CAB02275.1|  381|Caenorhabditis elegans Hypothetical pr...    28   8.7  
U28940-3|AAD31556.1| 1212|Caenorhabditis elegans Transbilayer am...    28   8.7  
U28940-1|AAD31557.1| 1454|Caenorhabditis elegans Transbilayer am...    28   8.7  

>Z81528-5|CAB04287.1|  698|Caenorhabditis elegans Hypothetical
           protein F35E2.6 protein.
          Length = 698

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 14/40 (35%), Positives = 26/40 (65%)
 Frame = +2

Query: 458 LSHFNSKGANYVLKLNKSMSVLYTAFLVNFQLYSFWKITN 577
           +S  N+  +N VL     +S  Y+ +LV++ +Y++WK+TN
Sbjct: 293 ISEGNAVLSNRVLTYIGDIS--YSLYLVHWPIYAYWKLTN 330


>Z81117-5|CAB03321.1|  279|Caenorhabditis elegans Hypothetical
           protein T06E6.11 protein.
          Length = 279

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 153 NECHWGSVIMSIHYSYYLIII 215
           NEC++G  +   HYSY LI+I
Sbjct: 165 NECYYGFWLSFEHYSYVLIVI 185


>Z81553-9|CAB04500.2|  663|Caenorhabditis elegans Hypothetical
           protein F56H6.11 protein.
          Length = 663

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = +2

Query: 458 LSHFNSKGANYVLKLNKSMSVLYTAFLVNFQLYSFWKITNN 580
           LS  N   +N VL     +S  Y+ +LV++ +Y++WK+T N
Sbjct: 287 LSENNPLLSNKVLTYIGDIS--YSLYLVHWPIYAYWKLTCN 325


>Z81104-10|CAB03214.1|  293|Caenorhabditis elegans Hypothetical
           protein Y40H7A.8 protein.
          Length = 293

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = +2

Query: 482 ANYVLKLNKSMSVLYTAFLVNFQLYSFWKITNNVFLNYY 598
           A++  +L + +S +     + F LY  W++TN+ FL+YY
Sbjct: 201 ADHYRQLLQRLSKVAICHTIVFSLYLCWQVTNS-FLSYY 238


>Z81038-17|CAB76409.1|  381|Caenorhabditis elegans Hypothetical
           protein Y106G6E.1 protein.
          Length = 381

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 64  SYHVTRDCRIRLSCI*NKMDGCQSDRWMC 150
           SYHVTR  R     + +K  GC+ D W C
Sbjct: 186 SYHVTRYYRPPELILGSKYYGCKIDTWSC 214


>AL033510-11|CAA22071.1|  293|Caenorhabditis elegans Hypothetical
           protein Y40H7A.8 protein.
          Length = 293

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = +2

Query: 482 ANYVLKLNKSMSVLYTAFLVNFQLYSFWKITNNVFLNYY 598
           A++  +L + +S +     + F LY  W++TN+ FL+YY
Sbjct: 201 ADHYRQLLQRLSKVAICHTIVFSLYLCWQVTNS-FLSYY 238


>AL032656-5|CAB76732.1|  381|Caenorhabditis elegans Hypothetical
           protein Y106G6E.1 protein.
          Length = 381

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 64  SYHVTRDCRIRLSCI*NKMDGCQSDRWMC 150
           SYHVTR  R     + +K  GC+ D W C
Sbjct: 186 SYHVTRYYRPPELILGSKYYGCKIDTWSC 214


>Z81595-2|CAB04749.1|  527|Caenorhabditis elegans Hypothetical
           protein T22H2.2 protein.
          Length = 527

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/39 (33%), Positives = 25/39 (64%)
 Frame = +2

Query: 458 LSHFNSKGANYVLKLNKSMSVLYTAFLVNFQLYSFWKIT 574
           +S  N+  +N VL     +S  Y+ +L+++ +YS+WK+T
Sbjct: 259 ISEDNAVLSNRVLTYIGDIS--YSLYLIHWPIYSYWKLT 295


>Z81553-10|CAB04501.2|  668|Caenorhabditis elegans Hypothetical
           protein F56H6.12 protein.
          Length = 668

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 14/39 (35%), Positives = 25/39 (64%)
 Frame = +2

Query: 458 LSHFNSKGANYVLKLNKSMSVLYTAFLVNFQLYSFWKIT 574
           LS  NS  +N +L     +S  Y+ +LV++ +Y++WK+T
Sbjct: 287 LSENNSVLSNKLLTYIGDIS--YSLYLVHWPIYAYWKLT 323


>Z80215-8|CAB02275.1|  381|Caenorhabditis elegans Hypothetical
           protein C36B1.10 protein.
          Length = 381

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 64  SYHVTRDCRIRLSCI*NKMDGCQSDRWMC 150
           SYHVTR  R     + +K  GC+ D W C
Sbjct: 186 SYHVTRYYRPPELLLGSKNYGCKIDTWSC 214


>U28940-3|AAD31556.1| 1212|Caenorhabditis elegans Transbilayer
           amphipath transporters(subfamily iv p-type atpase)
           protein 4, isoform a protein.
          Length = 1212

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
 Frame = +2

Query: 140 DGCVKRMSLGQCDNEHPLQLLPNYNTGFIN*FSTFRIEAKRPTDLKT*ILSAYKK--YSI 313
           D   KRMS+     + PL      ++  I+  S+  +E+KR  DLK  + +  KK   ++
Sbjct: 699 DATRKRMSVIVNSQKGPLMYCKGADSAIISRLSSDSLESKRVQDLKDHLDNYAKKGLRTL 758

Query: 314 CFSLE 328
           CF+++
Sbjct: 759 CFAMK 763


>U28940-1|AAD31557.1| 1454|Caenorhabditis elegans Transbilayer
           amphipath transporters(subfamily iv p-type atpase)
           protein 4, isoform b protein.
          Length = 1454

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
 Frame = +2

Query: 140 DGCVKRMSLGQCDNEHPLQLLPNYNTGFIN*FSTFRIEAKRPTDLKT*ILSAYKK--YSI 313
           D   KRMS+     + PL      ++  I+  S+  +E+KR  DLK  + +  KK   ++
Sbjct: 699 DATRKRMSVIVNSQKGPLMYCKGADSAIISRLSSDSLESKRVQDLKDHLDNYAKKGLRTL 758

Query: 314 CFSLE 328
           CF+++
Sbjct: 759 CFAMK 763


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,057,308
Number of Sequences: 27780
Number of extensions: 285664
Number of successful extensions: 539
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)