Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0635
         (784 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    24   1.8  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    23   3.2  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    23   3.2  
AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    23   3.2  
AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding prote...    23   3.2  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    22   5.6  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   5.6  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   9.8  

>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 482 ANYVLKLNKSMSVLYTAFLVNF 547
           A + L LNK +SV YTA +  F
Sbjct: 142 ATFSLDLNKVVSVFYTAVIPMF 163


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 482 ANYVLKLNKSMSVLYTAFL 538
           A + L LNK +SV YTA +
Sbjct: 143 ATFSLDLNKVVSVFYTAVI 161


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +2

Query: 524 YTAFLVNFQLYSFWKITNNVFLNY 595
           +   + +F+    W+ITNN+F  Y
Sbjct: 206 FALLVYDFRNSRSWRITNNLFYPY 229


>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
 Frame = +2

Query: 104 VFETKWTAVNLTDGCVKRMSLGQC--DNEHPLQLLP 205
           V ET    V  T+GC      G+C  +N+  L L P
Sbjct: 111 VVETCKKEVTSTEGCEVAWQFGKCIYENDKELYLAP 146


>AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding protein
           protein.
          Length = 120

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
 Frame = +2

Query: 104 VFETKWTAVNLTDGCVKRMSLGQC--DNEHPLQLLP 205
           V ET    V  T+GC      G+C  +N+  L L P
Sbjct: 85  VVETCKKEVTSTEGCEVAWQFGKCIYENDKELYLAP 120


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 105 YLKQNGRLSI*QMDVSN 155
           +LK+N RL++   DVSN
Sbjct: 204 WLKENSRLALKPKDVSN 220


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 346 FRLF*IKRLPYSNVIEKLKSDNSSIT 423
           +RL   KRLP+  + EK  SD++S T
Sbjct: 335 YRLELQKRLPWLELQEKPISDSTSTT 360


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +3

Query: 192 YSYYLIIIRVLSIDLAPLELKLNDRPT*KHRFYQLIKNI 308
           Y  +  I+  +SI +  + +  N R    HR  QLI+ I
Sbjct: 299 YLLFTFIMNTVSILVTVIIINWNFRGPRTHRMPQLIRKI 337


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,712
Number of Sequences: 438
Number of extensions: 3567
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)