Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0633
         (597 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M...    35   0.010
SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4 |Schiz...    27   1.6  
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po...    27   2.1  
SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   3.6  
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce...    26   4.8  
SPAC27F1.05c |||aminotransferase class-III, unknown specificty|S...    25   6.3  
SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1 |Schizosa...    25   6.3  

>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 342

 Score = 34.7 bits (76), Expect = 0.010
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
 Frame = +3

Query: 54  IIGTSQDLFV--EFVSSPAGPLLNTGFHFNVGNWPGHVEARGSRVGTCDWLL 203
           ++G S D F   E + +PA P+   G     G W    E R      CDW++
Sbjct: 34  VLGCSDDFFASCENLINPADPIRKAGVFVETGAWYDGWETRRHNTAPCDWVI 85


>SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 674

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = +2

Query: 254 RCALVSSSYLMYLPDARIPWTGCEAVLSQVRKQIQLRNL 370
           RC ++   +++Y P+A  PW G  A+ +++    + R L
Sbjct: 452 RCRILYEKWILYDPEACAPWLGYAALETKLGDSDRARAL 490


>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 562

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 233 HGRHIPVRCALVSSSYLMYLPDARIP 310
           + R + ++ A  S SY +YLPD+ IP
Sbjct: 308 YNRIMLIKTAKASGSYRLYLPDSYIP 333


>SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 527

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 6/23 (26%), Positives = 18/23 (78%)
 Frame = +1

Query: 352 NTITQSEAVFVNLLSPCPNENII 420
           NT++ + ++F++++ PCP  +++
Sbjct: 135 NTLSLTPSIFLSVMKPCPKTSVL 157


>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 993

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 241 PSVSPDFFKDSAVSNQSQVPTLDP 170
           P+ + DFF+    S+Q  VP LDP
Sbjct: 392 PNQTLDFFRSLDESHQHYVPVLDP 415


>SPAC27F1.05c |||aminotransferase class-III, unknown
           specificty|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 484

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +2

Query: 242 HIPVRCALVSSSYLMYLPDARIPWTGCEAVLSQVRKQI 355
           H+ V C+L + S   +LP   IP    +  LS V   +
Sbjct: 431 HVQVYCSLNNPSVFRFLPPLTIPEADLDEGLSAVESAV 468


>SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 652

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +2

Query: 281 LMYLPDARIPWTGCEA-VLSQVRKQIQLRNLKLSL*TYCH 397
           L Y+    +PWT C++ VLS    +   R++ L L  Y H
Sbjct: 221 LEYMSGGEVPWTDCDSPVLSISEARQYFRDVVLGL-EYLH 259


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,576,941
Number of Sequences: 5004
Number of extensions: 52358
Number of successful extensions: 106
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)