Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0633
         (597 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1210 + 31761689-31762255,31762318-31762322,31763009-317631...    29   3.7  
10_08_0629 - 19396879-19397685                                         27   8.6  

>04_04_1210 +
           31761689-31762255,31762318-31762322,31763009-31763146,
           31774759-31775368
          Length = 439

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +2

Query: 44  SLLNHRNFSRSVRRIRQLTCRASA 115
           +LL HRN   + R++R ++CRASA
Sbjct: 30  NLLLHRNRKTNGRKLRSVSCRASA 53


>10_08_0629 - 19396879-19397685
          Length = 268

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +2

Query: 44  SLLNHRNFSRSVRRIRQLTCRASAKYW 124
           SLL H +    VR IRQ   RA+  YW
Sbjct: 32  SLLRHASIPVDVRPIRQPDLRAAGLYW 58


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,996,079
Number of Sequences: 37544
Number of extensions: 344365
Number of successful extensions: 742
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)