Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0633
         (597 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4866| Best HMM Match : DUF1509 (HMM E-Value=3.8)                    29   3.8  
SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_29559| Best HMM Match : zf-CCHC (HMM E-Value=0.0015)                28   5.0  
SB_10779| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_47477| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_1138| Best HMM Match : CUB (HMM E-Value=0)                          28   6.6  

>SB_4866| Best HMM Match : DUF1509 (HMM E-Value=3.8)
          Length = 1065

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = -3

Query: 235 VSPDFFKDSAVSNQSQVPTLDPRASTCPGQLPTLKWKPVFSRGP--AGELTNSTNRS*EV 62
           V  D     AV +  ++   +PR   CP + P  +W+P  + GP  +G L    + +  +
Sbjct: 647 VCTDAIYAKAVPSGVKLEERNPRYGECPHKKPGYEWRPEAAWGPKKSGSLAKEPSTAPSL 706

Query: 61  P 59
           P
Sbjct: 707 P 707


>SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1651

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = -3

Query: 247 NMPSVSPDFFKDSAVSN--QSQVPTLDPRASTCPGQLPTLKWKPVFSRGPAGELTNS 83
           ++PS+SPD  +DS   +  QS V    P  S CP  +   K + ++ +  A   +++
Sbjct: 690 SLPSLSPDSSRDSDYQSRAQSTVRAPHPSPSACPSAMTDYKRRMLWKKQVASRQSSA 746


>SB_29559| Best HMM Match : zf-CCHC (HMM E-Value=0.0015)
          Length = 858

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/61 (26%), Positives = 27/61 (44%)
 Frame = -3

Query: 313 PGNPCIR*VHEV*GGYQCATDRNMPSVSPDFFKDSAVSNQSQVPTLDPRASTCPGQLPTL 134
           PG P I     + G + C  + +   + P  F    V  +  +P L PR+ TC   +P +
Sbjct: 416 PGVPAI-----IGGDFNCGGNTDRSYLRPGTFHAGGVLYRQAIPFLRPRSRTCGLTIPDI 470

Query: 133 K 131
           +
Sbjct: 471 E 471


>SB_10779| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 897

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +3

Query: 15  IGTFCGMGKFPYSIIGTSQDLFVEFVS 95
           IG +CG G  P+ +  +S  +FV+FVS
Sbjct: 105 IGKYCG-GMQPFDVDSSSNQMFVKFVS 130


>SB_47477| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 632

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +2

Query: 146 LAWTRRSPRIQSRNL*LVAHC*IFEKVW*HGRHIPVRCALV 268
           + W+RR PR  + N   ++     E+   HG H+  R  LV
Sbjct: 142 IVWSRRPPRKDNTNQDYISEAKALERAGGHGLHLLSRLRLV 182


>SB_1138| Best HMM Match : CUB (HMM E-Value=0)
          Length = 499

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +3

Query: 267 YPPHTSCTYLMQGFPGQVVRLYF 335
           YP ++SCT+++    GQ+V+L F
Sbjct: 50  YPSYSSCTWIIGAAMGQLVKLTF 72


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,783,786
Number of Sequences: 59808
Number of extensions: 401180
Number of successful extensions: 889
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)