Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0633
         (597 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74473-7|CAA98952.1| 3871|Caenorhabditis elegans Hypothetical pr...    31   0.82 
Z74046-5|CAA98557.1| 3871|Caenorhabditis elegans Hypothetical pr...    31   0.82 
AL132876-29|CAF31497.1|  840|Caenorhabditis elegans Hypothetical...    29   1.9  
AL132876-27|CAD21658.1|  906|Caenorhabditis elegans Hypothetical...    29   1.9  
Z92813-2|CAB07284.1|  353|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AC024845-1|AAF60850.2|  347|Caenorhabditis elegans Hypothetical ...    29   3.3  
Z70686-3|CAA94611.1|  364|Caenorhabditis elegans Hypothetical pr...    28   5.8  
X75331-1|CAA53080.1|  620|Caenorhabditis elegans acetylcholinest...    28   5.8  
U58731-1|AAB00593.1|  620|Caenorhabditis elegans Abnormal acetyl...    28   5.8  
Z83122-8|CAF31484.1|  582|Caenorhabditis elegans Hypothetical pr...    27   7.7  
Z83122-7|CAF31483.1|  618|Caenorhabditis elegans Hypothetical pr...    27   7.7  
Z83122-6|CAF31482.1|  587|Caenorhabditis elegans Hypothetical pr...    27   7.7  
Z83122-5|CAB05600.1|  654|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>Z74473-7|CAA98952.1| 3871|Caenorhabditis elegans Hypothetical protein
            ZC116.3 protein.
          Length = 3871

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 28/69 (40%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
 Frame = +3

Query: 15   IGTFCGMGKFPYSIIGTSQDLFVEFVS--SPAGPLLNTGFHFNVGNWPGHVEARGSRVGT 188
            +G FCG    P SI  T+  + V FVS  S AGP            W    EA  SR  T
Sbjct: 1027 LGKFCG-AMIPPSIYSTTNTMAVVFVSDRSVAGP-----------GWNAKFEAV-SRKTT 1073

Query: 189  CDWLLTAES 215
            CD+ LTA S
Sbjct: 1074 CDFTLTAPS 1082


>Z74046-5|CAA98557.1| 3871|Caenorhabditis elegans Hypothetical protein
            ZC116.3 protein.
          Length = 3871

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 28/69 (40%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
 Frame = +3

Query: 15   IGTFCGMGKFPYSIIGTSQDLFVEFVS--SPAGPLLNTGFHFNVGNWPGHVEARGSRVGT 188
            +G FCG    P SI  T+  + V FVS  S AGP            W    EA  SR  T
Sbjct: 1027 LGKFCG-AMIPPSIYSTTNTMAVVFVSDRSVAGP-----------GWNAKFEAV-SRKTT 1073

Query: 189  CDWLLTAES 215
            CD+ LTA S
Sbjct: 1074 CDFTLTAPS 1082


>AL132876-29|CAF31497.1|  840|Caenorhabditis elegans Hypothetical
           protein Y105E8A.7b protein.
          Length = 840

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 267 YPPHTSCTYLMQGFPGQVVRLYF 335
           YP  T+CTY + G PG+ + L+F
Sbjct: 509 YPLDTNCTYYIVGQPGKEILLHF 531



 Score = 27.9 bits (59), Expect = 5.8
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 267 YPPHTSCTYLMQGFPGQVVRLYF 335
           YP +  C+YLM+   G+ +RL+F
Sbjct: 202 YPHNMHCSYLMKAGRGERIRLFF 224


>AL132876-27|CAD21658.1|  906|Caenorhabditis elegans Hypothetical
           protein Y105E8A.7a protein.
          Length = 906

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 267 YPPHTSCTYLMQGFPGQVVRLYF 335
           YP  T+CTY + G PG+ + L+F
Sbjct: 509 YPLDTNCTYYIVGQPGKEILLHF 531



 Score = 27.9 bits (59), Expect = 5.8
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 267 YPPHTSCTYLMQGFPGQVVRLYF 335
           YP +  C+YLM+   G+ +RL+F
Sbjct: 202 YPHNMHCSYLMKAGRGERIRLFF 224


>Z92813-2|CAB07284.1|  353|Caenorhabditis elegans Hypothetical
           protein T28A8.2 protein.
          Length = 353

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +3

Query: 129 HFNVGNWPGHVEARGSRVGTCDWLLTAESLKKSGDTEGIFLSVAHWYP 272
           H   G W G++ ++G++V   D   T +S+ K+GD +     + HW P
Sbjct: 268 HSTFGWWMGYL-SKGNQVYYADIRGTNDSVYKTGDLKPDDYYLPHWIP 314


>AC024845-1|AAF60850.2|  347|Caenorhabditis elegans Hypothetical
           protein Y65B4BL.3 protein.
          Length = 347

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 102 AGPLLNTGFHFNVGNWPGHVEARGS 176
           AGPLL+  +  +V NW    E RG+
Sbjct: 289 AGPLLSDSYRLSVNNWQAANETRGT 313


>Z70686-3|CAA94611.1|  364|Caenorhabditis elegans Hypothetical
           protein R10H10.3 protein.
          Length = 364

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 267 YPPHTSCTYLMQGFPGQVVRLYF 335
           YPP+  C Y +   PG+V+++ F
Sbjct: 62  YPPNDKCYYYISAEPGKVLKISF 84


>X75331-1|CAA53080.1|  620|Caenorhabditis elegans
           acetylcholinesterase protein.
          Length = 620

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 392 NKFTKTASDCVIVFAFLPGKVQPH 321
           N  TK + DC+ +  ++PGKV P+
Sbjct: 100 NANTKLSEDCLYLNVYVPGKVDPN 123


>U58731-1|AAB00593.1|  620|Caenorhabditis elegans Abnormal
           acetylcholinesterase protein1 protein.
          Length = 620

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 392 NKFTKTASDCVIVFAFLPGKVQPH 321
           N  TK + DC+ +  ++PGKV P+
Sbjct: 100 NANTKLSEDCLYLNVYVPGKVDPN 123


>Z83122-8|CAF31484.1|  582|Caenorhabditis elegans Hypothetical
           protein R11A5.4b protein.
          Length = 582

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
 Frame = +3

Query: 174 SRVGTCDWLLTAESLKKSGDT-EGIFLSVAHWYPPHTSCTYLMQGFPG 314
           +RV +  W++T         T EG+   + HW  P    T L   FPG
Sbjct: 116 ARVESKTWMVTKNKYDTVTHTKEGVEPIMGHWLAPEDLATELDSRFPG 163


>Z83122-7|CAF31483.1|  618|Caenorhabditis elegans Hypothetical
           protein R11A5.4d protein.
          Length = 618

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
 Frame = +3

Query: 174 SRVGTCDWLLTAESLKKSGDT-EGIFLSVAHWYPPHTSCTYLMQGFPG 314
           +RV +  W++T         T EG+   + HW  P    T L   FPG
Sbjct: 80  ARVESKTWMVTKNKYDTVTHTKEGVEPIMGHWLAPEDLATELDSRFPG 127


>Z83122-6|CAF31482.1|  587|Caenorhabditis elegans Hypothetical
           protein R11A5.4c protein.
          Length = 587

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
 Frame = +3

Query: 174 SRVGTCDWLLTAESLKKSGDT-EGIFLSVAHWYPPHTSCTYLMQGFPG 314
           +RV +  W++T         T EG+   + HW  P    T L   FPG
Sbjct: 49  ARVESKTWMVTKNKYDTVTHTKEGVEPIMGHWLAPEDLATELDSRFPG 96


>Z83122-5|CAB05600.1|  654|Caenorhabditis elegans Hypothetical
           protein R11A5.4a protein.
          Length = 654

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
 Frame = +3

Query: 174 SRVGTCDWLLTAESLKKSGDT-EGIFLSVAHWYPPHTSCTYLMQGFPG 314
           +RV +  W++T         T EG+   + HW  P    T L   FPG
Sbjct: 116 ARVESKTWMVTKNKYDTVTHTKEGVEPIMGHWLAPEDLATELDSRFPG 163


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,494,635
Number of Sequences: 27780
Number of extensions: 302842
Number of successful extensions: 719
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)