Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0633
         (597 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g11640.1 68416.m01427 expressed protein                             28   5.4  
At5g64360.3 68418.m08085 DNAJ heat shock N-terminal domain-conta...    27   9.5  
At5g64360.2 68418.m08084 DNAJ heat shock N-terminal domain-conta...    27   9.5  
At5g64360.1 68418.m08083 DNAJ heat shock N-terminal domain-conta...    27   9.5  
At5g57870.2 68418.m07239 eukaryotic translation initiation facto...    27   9.5  
At5g57870.1 68418.m07238 eukaryotic translation initiation facto...    27   9.5  
At1g67820.1 68414.m07741 protein phosphatase 2C, putative / PP2C...    27   9.5  

>At3g11640.1 68416.m01427 expressed protein
          Length = 186

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 521 ILCIKKTHRHKPTESCTG 574
           ++C KK H H   E CTG
Sbjct: 50  LMCCKKNHHHSRIEPCTG 67


>At5g64360.3 68418.m08085 DNAJ heat shock N-terminal
           domain-containing protein low similarity to AHM1
           [Triticum aestivum] GI:6691467; contains Pfam profile
           PF00226 DnaJ domain
          Length = 464

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +3

Query: 138 VGNWPGHVEARGSRVGTCDWLLTAESLKKSGDTEG 242
           VG   G     G+RV    WL+T+E L  S D +G
Sbjct: 2   VGGRGGVGGGGGNRVEADQWLVTSEKLLASSDLQG 36


>At5g64360.2 68418.m08084 DNAJ heat shock N-terminal
           domain-containing protein low similarity to AHM1
           [Triticum aestivum] GI:6691467; contains Pfam profile
           PF00226 DnaJ domain
          Length = 464

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +3

Query: 138 VGNWPGHVEARGSRVGTCDWLLTAESLKKSGDTEG 242
           VG   G     G+RV    WL+T+E L  S D +G
Sbjct: 2   VGGRGGVGGGGGNRVEADQWLVTSEKLLASSDLQG 36


>At5g64360.1 68418.m08083 DNAJ heat shock N-terminal
           domain-containing protein low similarity to AHM1
           [Triticum aestivum] GI:6691467; contains Pfam profile
           PF00226 DnaJ domain
          Length = 422

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +3

Query: 138 VGNWPGHVEARGSRVGTCDWLLTAESLKKSGDTEG 242
           VG   G     G+RV    WL+T+E L  S D +G
Sbjct: 2   VGGRGGVGGGGGNRVEADQWLVTSEKLLASSDLQG 36


>At5g57870.2 68418.m07239 eukaryotic translation initiation factor
           4F, putative / eIF-4F, putative similar to SP|Q03387
           Eukaryotic initiation factor (iso)4F subunit P82-34
           (eIF-(iso)4F P82-34) {Triticum aestivum}; contains Pfam
           profiles PF02854: MIF4G domain, PF02847: MA3 domain
          Length = 776

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -3

Query: 265 QCATDRNMPSVSPDFFKDS-AVSNQSQVPTLDPRAS 161
           QC  +  +PS  P+F K++ ++S +   P ++P A+
Sbjct: 635 QCVEELGLPSYHPEFVKEAISLSLEKSPPVVEPIAT 670


>At5g57870.1 68418.m07238 eukaryotic translation initiation factor
           4F, putative / eIF-4F, putative similar to SP|Q03387
           Eukaryotic initiation factor (iso)4F subunit P82-34
           (eIF-(iso)4F P82-34) {Triticum aestivum}; contains Pfam
           profiles PF02854: MIF4G domain, PF02847: MA3 domain
          Length = 780

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -3

Query: 265 QCATDRNMPSVSPDFFKDS-AVSNQSQVPTLDPRAS 161
           QC  +  +PS  P+F K++ ++S +   P ++P A+
Sbjct: 639 QCVEELGLPSYHPEFVKEAISLSLEKSPPVVEPIAT 674


>At1g67820.1 68414.m07741 protein phosphatase 2C, putative / PP2C,
           putative similar to protein phosphatase 2C
           emb|CAA72341.1
          Length = 445

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 9/39 (23%), Positives = 22/39 (56%)
 Frame = -3

Query: 202 SNQSQVPTLDPRASTCPGQLPTLKWKPVFSRGPAGELTN 86
           +++++ P+L+    + P + P   WK ++++    EL N
Sbjct: 384 NSENESPSLNREIGSSPSKSPITPWKSLWAKAACKELAN 422


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,583,761
Number of Sequences: 28952
Number of extensions: 278877
Number of successful extensions: 610
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)