Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0632
         (624 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    31   0.18 
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ...    27   2.2  
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc...    25   6.7  
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ...    25   8.9  
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa...    25   8.9  
SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual        25   8.9  
SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|c...    25   8.9  
SPBC1271.14 |||glutamate N-acetyltransferase |Schizosaccharomyce...    25   8.9  

>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 30.7 bits (66), Expect = 0.18
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = -3

Query: 286 SAWGPSFSVRSGCYSRMTSRSDLRDACSPGPGRLARRNPPP 164
           SA G S SVR G Y+ ++S+ D  +  S GP      N PP
Sbjct: 653 SAIGRSTSVREGRYAGISSQMDSLNMDSTGPSASNMANAPP 693


>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 528

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +3

Query: 402 TGSNPDGTGSNRTGAALASRHGRGVS 479
           T S+P GT S+ + ++ +S+H  G+S
Sbjct: 462 TQSSPSGTNSSTSTSSTSSKHSTGIS 487


>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 430

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 591 HNITELINDVEFHSQ 547
           H  T+++NDV+FH Q
Sbjct: 232 HRHTDIVNDVQFHPQ 246


>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 803

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 582 TELINDVEFHSQVGSCYIKYVTKY 511
           T L  D      VG C++ Y+T+Y
Sbjct: 415 TSLYRDHPVSEIVGRCFVMYITRY 438


>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
           Trk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 841

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -1

Query: 123 VGVR*ILLPVNVRTVYWGLQELA*TFNDSEFSVV 22
           VG R ++   ++R  +W L   A +FND  FS++
Sbjct: 493 VGSREVIDSYDLRRGWWALFSSASSFNDLGFSLI 526


>SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 583

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 315 DREGGVLQVPLHGVPHFPSGRGAT 244
           +R  G+++ PLHG+P       AT
Sbjct: 123 ERANGIIRGPLHGIPFIVKDNFAT 146


>SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 392

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = +1

Query: 190 DLALVNKHLEGL-SVTSSGCST 252
           D   V KHLEGL  +TS G +T
Sbjct: 155 DAEFVEKHLEGLRKITSRGANT 176


>SPBC1271.14 |||glutamate N-acetyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 445

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 24/95 (25%), Positives = 41/95 (43%)
 Frame = +1

Query: 109 LSHADHDLLEPLSRDSPDRGEGSSVPTDLALVNKHLEGLSVTSSGCSTPTGRKMRDPMQR 288
           L HA ++    +S D    G+ S+  T   L N    G  +T S   +P  +++RD +  
Sbjct: 246 LRHAINNSFNSISID----GDTSTNDTIAFLANGAAGGSEITKS---SPAYKEIRDAVTD 298

Query: 289 DLQNSTFSISKETEGLDTKTSVRVRNPPGGKSSGL 393
             Q     + ++ EG     +V+VR     K + L
Sbjct: 299 IAQQLAKLVVRDGEGATKFVTVQVRGARSEKDAAL 333


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,622,163
Number of Sequences: 5004
Number of extensions: 55421
Number of successful extensions: 183
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)