Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0632
(624 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g18620.1 68414.m02321 expressed protein 33 0.20
At5g08550.1 68418.m01017 expressed protein 30 1.1
At1g34260.1 68414.m04252 phosphatidylinositol-4-phosphate 5-kina... 30 1.1
At3g06020.1 68416.m00687 expressed protein ; expression supporte... 29 2.5
At4g22250.1 68417.m03219 zinc finger (C3HC4-type RING finger) fa... 29 3.3
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 29 3.3
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 29 3.3
At3g24340.1 68416.m03056 SNF2 domain-containing protein / helica... 28 4.4
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 27 7.7
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 27 7.7
>At1g18620.1 68414.m02321 expressed protein
Length = 978
Score = 32.7 bits (71), Expect = 0.20
Identities = 22/84 (26%), Positives = 39/84 (46%)
Frame = +1
Query: 133 LEPLSRDSPDRGEGSSVPTDLALVNKHLEGLSVTSSGCSTPTGRKMRDPMQRDLQNSTFS 312
L+ + + R + P+D + + K + V S+ ++P GR+ R QR LQ +
Sbjct: 564 LQQMKPEHDKRSRPPASPSDSSKLRKQISRQPVEST--TSPGGRRSRPRDQRSLQQNDGQ 621
Query: 313 ISKETEGLDTKTSVRVRNPPGGKS 384
+S+ + TK + GGKS
Sbjct: 622 LSQMSNKSRTKIEATLSIENGGKS 645
>At5g08550.1 68418.m01017 expressed protein
Length = 908
Score = 30.3 bits (65), Expect = 1.1
Identities = 28/89 (31%), Positives = 37/89 (41%), Gaps = 3/89 (3%)
Frame = +2
Query: 260 DGK*GTPCRGTCKTPPSLSAKRLKDSTPRLRFAS-ATRRAASPPGSGRNRIKP--GRNRI 430
DGK TP T S K L S P+ + S A G+ R IKP GR+R+
Sbjct: 21 DGKVATPSSKPTSTLSSSKPKTLSASAPKKKLLSFADDEEEEEDGAPRVTIKPKNGRDRV 80
Query: 431 KPDRSRTSFTARARCQSTCEKIFSSTKYL 517
K + R ST E+ +S+ L
Sbjct: 81 KSSSRLGVSGSSHRHSSTKERRPASSNVL 109
>At1g34260.1 68414.m04252 phosphatidylinositol-4-phosphate 5-kinase
family protein low similarity to SP|Q9Z1T6 FYVE
finger-containing phosphoinositide kinase (EC 2.7.1.68)
(1- phosphatidylinositol-4-phosphate kinase) (PIP5K)
(PtdIns(4)P-5-kinase) {Mus musculus}; contains Pfam
profile PF01504: Phosphatidylinositol-4-phosphate
5-Kinase
Length = 1456
Score = 30.3 bits (65), Expect = 1.1
Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
Frame = +1
Query: 25 DGKLRVVEGLGKFLKTPINSPYVYGEQNLSHADHDLLEPLSRDSPDRGEGSSVPTDLALV 204
D KL ++ + + + +PI S Q L H D +E + + GE PT +
Sbjct: 320 DMKLHRLQRISRCIGSPILSVDSLSSQKLKHCDSFRIEKIVEEHNAAGESDKKPTKTLMF 379
Query: 205 NKHLE---GLSVTSSGCSTPTGRKMRDPMQ 285
+ G ++ GC + +K+++ +Q
Sbjct: 380 LEGCPTRLGCTILLKGCHSERLKKVKEVVQ 409
>At3g06020.1 68416.m00687 expressed protein ; expression supported
by MPSS
Length = 300
Score = 29.1 bits (62), Expect = 2.5
Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 3/102 (2%)
Frame = +1
Query: 73 PINSPYVYGEQNLSHADHDLLEPLSRDSPDRGEGSSVPTDLALVNKHL---EGLSVTSSG 243
P +SP + + LE LS S + E ++P + ++ E L++ +
Sbjct: 60 PSSSPNPSSNSDTNSGSWSFLESLSNSSSNDKEKKTLPLFQSPSSRRTLSDESLALCTES 119
Query: 244 CSTPTGRKMRDPMQRDLQNSTFSISKETEGLDTKTSVRVRNP 369
+ TG D + D+ FSIS E + ++T+T+ NP
Sbjct: 120 LGSETGS---DIIHEDM----FSISSELQTMETRTTSTTSNP 154
>At4g22250.1 68417.m03219 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 214
Score = 28.7 bits (61), Expect = 3.3
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +3
Query: 378 QVLRALVGTGSNPDGTGSNRTGAALASRHGRGVSLLVKKSLVPRNI 515
Q+ LV + GTG N A A R+ RG S + + PR +
Sbjct: 83 QIETGLVLESDHGSGTGMNLATALEAERYNRGESTEAEADMTPRRV 128
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 28.7 bits (61), Expect = 3.3
Identities = 21/63 (33%), Positives = 32/63 (50%)
Frame = +2
Query: 296 KTPPSLSAKRLKDSTPRLRFASATRRAASPPGSGRNRIKPGRNRIKPDRSRTSFTARARC 475
++PP S +R++ S R R RR + PP R R P R+ I+ RSR+ R
Sbjct: 281 RSPPRGSPRRIRGSPVRRRSPLPLRRRSPPP--RRLRSPPRRSPIR-RRSRSPIRRPGRS 337
Query: 476 QST 484
+S+
Sbjct: 338 RSS 340
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 28.7 bits (61), Expect = 3.3
Identities = 21/63 (33%), Positives = 32/63 (50%)
Frame = +2
Query: 296 KTPPSLSAKRLKDSTPRLRFASATRRAASPPGSGRNRIKPGRNRIKPDRSRTSFTARARC 475
++PP S +R++ S R R RR + PP R R P R+ I+ RSR+ R
Sbjct: 288 RSPPRGSPRRIRGSPVRRRSPLPLRRRSPPP--RRLRSPPRRSPIR-RRSRSPIRRPGRS 344
Query: 476 QST 484
+S+
Sbjct: 345 RSS 347
>At3g24340.1 68416.m03056 SNF2 domain-containing protein / helicase
domain-containing protein similar to SP|P41410 DNA
repair protein rhp54 (RAD54 homolog)
{Schizosaccharomyces pombe}; contains PFam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 1132
Score = 28.3 bits (60), Expect = 4.4
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Frame = -3
Query: 253 GCYSRMTS--RSDLRDACSPGPGRLARR 176
GC + T R ++RDACSP P + RR
Sbjct: 39 GCVNSRTEKRRVNMRDACSPSPRKKKRR 66
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 27.5 bits (58), Expect = 7.7
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Frame = -1
Query: 615 QKVLPYFAH--NITE--LINDVEFHSQVGSCYIKYVT 517
+++ PYF N+ E LI D Q G C++KY T
Sbjct: 134 EEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYAT 170
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 27.5 bits (58), Expect = 7.7
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Frame = -1
Query: 615 QKVLPYFAH--NITE--LINDVEFHSQVGSCYIKYVT 517
+++ PYF N+ E LI D Q G C++KY T
Sbjct: 134 EEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYAT 170
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,393,921
Number of Sequences: 28952
Number of extensions: 331430
Number of successful extensions: 939
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 939
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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