Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0631
         (657 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase |Schizosacch...    27   1.8  
SPBC16A3.14 |||mitochondrial ribosomal protein subunit S26|Schiz...    26   5.5  
SPBC14F5.05c |sam1||S-adenosylmethionine synthetase |Schizosacch...    26   5.5  
SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145 |Schizo...    26   5.5  
SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyce...    25   7.3  
SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo...    25   9.6  
SPAC30C2.06c |dml1||mitochondrial genome maintenance protein |Sc...    25   9.6  

>SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 474

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 370 YHEISSTKFVVKFETRLASYL 432
           YH+IS+ KF V +E  + +YL
Sbjct: 43  YHDISAVKFPVDYEKSIGNYL 63


>SPBC16A3.14 |||mitochondrial ribosomal protein subunit
           S26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 277

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 581 QLSSLTFQLHFFFISLIGSQA 643
           Q +S  +  HFFF SLIG +A
Sbjct: 105 QFASQAYNNHFFFQSLIGKRA 125


>SPBC14F5.05c |sam1||S-adenosylmethionine synthetase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 382

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 8/23 (34%), Positives = 18/23 (78%)
 Frame = +3

Query: 324 RTC*MVWAVDQRTPDLPRDIKYE 392
           +TC ++ A++Q++PD+ + + YE
Sbjct: 89  KTCNVLVAIEQQSPDIAQGLHYE 111


>SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -3

Query: 298 WMDTIGMQPLFCLHLKMY 245
           W D   + PLF  HLK Y
Sbjct: 204 WWDVSSLDPLFLTHLKAY 221


>SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +1

Query: 268 IMAACLLYPSKGNDSVEFLEH 330
           +++AC  +P+K   ++ FLEH
Sbjct: 110 VLSACDTFPAKAQKALTFLEH 130


>SPBC800.09 |sum2||G2/M transition checkpoint protein
           Sum2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +1

Query: 262 SKIMAACLLYPSKGNDSVEFLEHARWCG 345
           S I    +L      DS   L+H RWCG
Sbjct: 15  SDIRYVGILQDINSQDSTLALKHVRWCG 42


>SPAC30C2.06c |dml1||mitochondrial genome maintenance protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 465

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -1

Query: 381 YLVVDRVFFDPPPTPSSMF*KLNRVITLGWIQ*ACSHYF 265
           Y + + +  D   T  + F KLN  ++L  +  +CS YF
Sbjct: 239 YGIREPIQSDSSATIDNHFGKLNEALSLSQLNGSCSQYF 277


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,691,472
Number of Sequences: 5004
Number of extensions: 54024
Number of successful extensions: 92
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)