Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0631
         (657 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g79190.1 68414.m09233 expressed protein                             31   0.51 
At3g01060.2 68416.m00007 expressed protein                             27   8.3  

>At1g79190.1 68414.m09233 expressed protein
          Length = 1274

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 111 EGWGSRCNYTETLELISQGG*RICVVNVIVYGL 209
           E W S CN T + +L+ Q     C++N +++GL
Sbjct: 621 EDWQSWCNRTGSGQLVRQAATAACILNEMIFGL 653


>At3g01060.2 68416.m00007 expressed protein
          Length = 442

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 15/34 (44%), Positives = 16/34 (47%)
 Frame = -1

Query: 429 VTS*PSFKLYHKLRT*YLVVDRVFFDPPPTPSSM 328
           V S P    YHK     LV D V F P   PSS+
Sbjct: 223 VLSSPEVAFYHKRSRTLLVTDAVIFVPRKPPSSI 256


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,936,657
Number of Sequences: 28952
Number of extensions: 280441
Number of successful extensions: 484
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)