Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0630
         (522 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    27   0.10 
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    24   0.94 
DQ855488-1|ABH88175.1|  112|Tribolium castaneum chemosensory pro...    22   3.8  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    21   5.0  
X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    21   6.6  
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    21   6.6  
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    21   6.6  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    21   6.6  
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    21   6.6  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    21   6.6  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    21   6.6  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   6.6  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     21   8.7  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   8.7  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 27.1 bits (57), Expect = 0.10
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 43  KTQQWVTSKTHTSRPETPGPQPPS 114
           +T  W++S +    P TP P PPS
Sbjct: 102 RTDDWLSSPSGNVPPLTPSPGPPS 125


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 23.8 bits (49), Expect = 0.94
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 144 GFVMLKGRGCKIVEMSTSKTGKHGHAKVHLVGIDIFN 254
           GF+++     KIV +S +     GH +  L+G  IFN
Sbjct: 114 GFLLILTPNGKIVFVSHTVEHLLGHLQTDLMGQSIFN 150


>DQ855488-1|ABH88175.1|  112|Tribolium castaneum chemosensory
           protein 1 protein.
          Length = 112

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -3

Query: 103 EAPESPVSKCVSSMSPIVV 47
           EAP  PV + + S++P+V+
Sbjct: 55  EAPCDPVGRRLKSLAPLVL 73



 Score = 20.6 bits (41), Expect = 8.7
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +3

Query: 327 QLTDISDDGYLTLMADNGDLREDLKIPDGD 416
           QLT ISD+   + + D   L   LK   G+
Sbjct: 26  QLTRISDEAIESTLNDRRYLLRQLKCATGE 55


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 76  TSRPETPGPQPPSPC 120
           TSRP+   PQP   C
Sbjct: 93  TSRPKLQEPQPSQHC 107


>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 160 RVGGARLLKCPHPKPESTA 216
           R GG+++L   +PKP   A
Sbjct: 308 RTGGSQILTYKNPKPYKMA 326


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 160 RVGGARLLKCPHPKPESTA 216
           R GG+++L   +PKP   A
Sbjct: 309 RTGGSQILTYKNPKPYKMA 327


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 160 RVGGARLLKCPHPKPESTA 216
           R GG+++L   +PKP   A
Sbjct: 309 RTGGSQILTYKNPKPYKMA 327


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = -3

Query: 469 VHNNSLPLLKSVRNCVPRSPSG 404
           ++NN++ L K + N   ++P+G
Sbjct: 203 INNNNIELYKEIFNGKRKNPNG 224


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 64  SKTHTSRPETPGPQPPS 114
           S +HT    TP  +PPS
Sbjct: 60  STSHTDGASTPDVRPPS 76


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 64  SKTHTSRPETPGPQPPS 114
           S +HT    TP  +PPS
Sbjct: 216 STSHTDGASTPDVRPPS 232


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = +1

Query: 61  TSKTHTSRPETPGPQPPSPCNVRPCVKTVSLC 156
           T+ T +S       Q P P +VRP    V  C
Sbjct: 206 TASTASSASNYSPSQSPEPESVRPLSLVVRRC 237


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 500  DALLPAGFQHGAQQFLAAVE 441
            DAL P+G + G+   LAA++
Sbjct: 976  DALAPSGGKKGSSHPLAALQ 995


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 258 KKYEDICPSTHNMDV 302
           K YED CP++++  V
Sbjct: 665 KVYEDYCPTSNSGSV 679


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -3

Query: 505 GMTHSSPQDFSTVHNNSLPLLKSV 434
           G T   P D S VH++   LL  V
Sbjct: 122 GATSQPPTDNSHVHHHQTSLLGKV 145


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,014
Number of Sequences: 336
Number of extensions: 3110
Number of successful extensions: 15
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12573240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)