Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0630
(522 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC336.10c |tif512||translation initiation factor|Schizosacchar... 209 2e-55
SPAC26H5.10c |tif51||translation initiation factor eIF5A|Schizos... 208 4e-55
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 27 1.3
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos... 27 1.7
SPCC1223.12c |meu10||GPI anchored cell surface protein |Schizosa... 27 2.2
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 27 2.2
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po... 27 2.2
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po... 27 2.2
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa... 25 5.2
SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|ch... 25 5.2
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 25 6.8
SPBC16E9.17c |rem1||meiosis-specific cyclin Rem1|Schizosaccharom... 25 6.8
SPAC167.02 |ptb1||geranylgeranyltransferase II beta subunit |Sch... 25 6.8
SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces pom... 25 6.8
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 25 9.0
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce... 25 9.0
>SPBC336.10c |tif512||translation initiation
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 157
Score = 209 bits (510), Expect = 2e-55
Identities = 92/150 (61%), Positives = 120/150 (80%)
Frame = +3
Query: 54 MGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLKGRGCKIVEMSTSKTGKHGHAKVHL 233
M + E FE G++GAS TFPMQCSALRKNG V++KGR CKIV+MSTSKTGKHGHAKVH+
Sbjct: 1 MAEEEHVDFEGGEAGASLTFPMQCSALRKNGHVVIKGRPCKIVDMSTSKTGKHGHAKVHI 60
Query: 234 VGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDG 413
V +DIFNG+KYED+ PSTHNMDVP VKR++YQL +I DDGYL LM +G ++D+++P+G
Sbjct: 61 VALDIFNGRKYEDMSPSTHNMDVPVVKRDEYQLVNI-DDGYLNLMTTDGTTKDDVRLPEG 119
Query: 414 DLGTQLRTDFNSGKELLCTVLKSCGEECVI 503
+LG ++ F GK+L+ TV+ + GEE +
Sbjct: 120 ELGNEIEEGFEEGKDLIITVVSAMGEEIAL 149
>SPAC26H5.10c |tif51||translation initiation factor
eIF5A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 208 bits (508), Expect = 4e-55
Identities = 91/150 (60%), Positives = 121/150 (80%)
Frame = +3
Query: 54 MGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLKGRGCKIVEMSTSKTGKHGHAKVHL 233
M + E FE G++GAS TFPMQCSALRKNG V++KGR CKIV+MSTSKTGKHGHAKVH+
Sbjct: 1 MAEEEHVDFEGGEAGASLTFPMQCSALRKNGHVVIKGRPCKIVDMSTSKTGKHGHAKVHI 60
Query: 234 VGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDG 413
V +DIFNG+KYED+ PSTHNMDVP VKR++YQL +I DDGYL LM +G ++D+++P+G
Sbjct: 61 VALDIFNGRKYEDMSPSTHNMDVPVVKRDEYQLVNI-DDGYLNLMTTDGTTKDDVRLPEG 119
Query: 414 DLGTQLRTDFNSGKELLCTVLKSCGEECVI 503
+LG ++ F+ G++L+ TV+ + GEE +
Sbjct: 120 ELGNEIEEGFDEGRDLIITVVSAMGEETAL 149
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 27.5 bits (58), Expect = 1.3
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 214 PCFPVLDVDISTILHPRPFSITKP 143
PC+P D D S++++P P S P
Sbjct: 121 PCYPHFDQDSSSVIYPSPPSTYYP 144
>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 449
Score = 27.1 bits (57), Expect = 1.7
Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = +3
Query: 114 PMQCSALRKNGFVMLKGRGCKIVEMSTSKTGK-HGHAKVHLVGIDIFNGKKY 266
P +CS ++ ++ C V G+ H H++G+D+ NG Y
Sbjct: 35 PRRCSTCKRINKRSIRCLSCHSVGCLWGHHGEEHAMEHTHMIGVDVKNGHTY 86
>SPCC1223.12c |meu10||GPI anchored cell surface protein
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 416
Score = 26.6 bits (56), Expect = 2.2
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 443 QQRQGIVVHRAEILRGGVRHPRQSK 517
+Q GI+ ++ + RG V +PRQSK
Sbjct: 334 RQSDGIIKGKSFVCRGSVDNPRQSK 358
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 26.6 bits (56), Expect = 2.2
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +3
Query: 291 NMDVPHVKREDYQLTDISDDGYL 359
NM +P+++ E Q+ D + D YL
Sbjct: 968 NMSIPYIRGEYVQMIDANQDNYL 990
>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 981
Score = 26.6 bits (56), Expect = 2.2
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +3
Query: 207 KHGHAKVHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDY 326
K A L+ D F+G ++ IC S N+ + V ED+
Sbjct: 878 KEADAYAPLLAYDKFDGDEFACICESMKNVKLDFVTLEDW 917
>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 594
Score = 26.6 bits (56), Expect = 2.2
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +3
Query: 198 KTGKHGHAKVHLVGIDIFNGK-KYEDICPSTHNMDVPHVKRED 323
K G+H A +++ + N K +D CPST D+ H+ R D
Sbjct: 164 KIGQHLSAMGYVIPKEWTNTMVKLQDRCPSTSLKDIDHLFRVD 206
>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 875
Score = 25.4 bits (53), Expect = 5.2
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +3
Query: 309 VKREDYQLTDISDDGYL 359
+KREDY+LT ++ GYL
Sbjct: 91 IKREDYELTLCANCGYL 107
>SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 204
Score = 25.4 bits (53), Expect = 5.2
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 146 FRYAEGSGVQDC*NVHIQNRKARPR*SSLGWD 241
+ + E +Q C N+ +N +A R SS GWD
Sbjct: 41 YHHLEKGLLQQCFNLVKKNMEALYRQSSFGWD 72
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 25.0 bits (52), Expect = 6.8
Identities = 8/23 (34%), Positives = 15/23 (65%)
Frame = +2
Query: 452 QGIVVHRAEILRGGVRHPRQSKH 520
+G V+H+ ++ GG + R +KH
Sbjct: 649 EGTVIHKTGLITGGSSNNRSAKH 671
>SPBC16E9.17c |rem1||meiosis-specific cyclin
Rem1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 402
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2
Query: 290 VCGGTDIFILFTIEDINPNQVNFSVAVLSG 201
+CG T +FI E+I+P V VL G
Sbjct: 219 LCGATALFIACKYEEIHPPTVKDLEIVLEG 248
>SPAC167.02 |ptb1||geranylgeranyltransferase II beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 311
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = -2
Query: 521 CVCFDGDDALLPAGFQHGAQQF--LAAVEVSTQL 426
C FDG L P HGA F +AA+++ +L
Sbjct: 160 CYNFDGGFGLCPGAESHGAMVFTCVAALKILNKL 193
>SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 25.0 bits (52), Expect = 6.8
Identities = 19/79 (24%), Positives = 29/79 (36%)
Frame = -3
Query: 466 HNNSLPLLKSVRNCVPRSPSGILRSSRRSPLSAIRVR*PXXXXXXXXXXSRFTWGTSMLC 287
HN+ LL +RN VP S+ R+ LS + R W + C
Sbjct: 85 HNSVFQLLSKIRNSVPNV------SAFRNNLSILSKELSFFSFARHIHNRRLCWAEFIYC 138
Query: 286 VEGQISSYFLPLKISIPTK 230
+ I + F +PT+
Sbjct: 139 IRRGIKAIFKTTVQFLPTR 157
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 426 QLRTDFNSGKELLCTVLKSCG 488
QL+ F E LCT+L SCG
Sbjct: 522 QLQNGFIPTCERLCTILLSCG 542
>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 817
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -3
Query: 445 LKSVRNCVPRSPSGILRSSRRSPLSAIR 362
+ S R C P +PS ++ +++ S +SA R
Sbjct: 328 ISSTRLCSPENPSLLVNTAKTSKMSARR 355
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,324,942
Number of Sequences: 5004
Number of extensions: 49274
Number of successful extensions: 187
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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