Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0630
(522 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15) 95 1e-34
SB_54795| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.33
SB_14043| Best HMM Match : Extensin_1 (HMM E-Value=0.75) 30 1.0
SB_6893| Best HMM Match : PPV_E2_C (HMM E-Value=0.94) 29 2.3
SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_53582| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42) 28 5.4
SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13) 28 5.4
SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_26376| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_16428| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_2412| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_50591| Best HMM Match : DUF1045 (HMM E-Value=9.2) 27 9.4
SB_13097| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_42643| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_19567| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15)
Length = 710
Score = 95.1 bits (226), Expect(2) = 1e-34
Identities = 42/60 (70%), Positives = 50/60 (83%)
Frame = +3
Query: 48 TTMGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLKGRGCKIVEMSTSKTGKHGHAKV 227
T ++ DT F +G+SGAS T+P QCS+LRKNG V++KGR CKIVEMSTSKTGKHGHAKV
Sbjct: 585 TMAEELADTEFHSGESGASDTYPAQCSSLRKNGHVVIKGRPCKIVEMSTSKTGKHGHAKV 644
Score = 68.9 bits (161), Expect(2) = 1e-34
Identities = 29/62 (46%), Positives = 43/62 (69%)
Frame = +3
Query: 327 QLTDISDDGYLTLMADNGDLREDLKIPDGDLGTQLRTDFNSGKELLCTVLKSCGEECVIP 506
++T+I +DGYL LM DNGD R D+K+ D D+ ++R F + + + TVLK+ GEE V+
Sbjct: 643 KVTNIEEDGYLELMDDNGDTRADIKLQDNDIAKEIRAKFEASENFMVTVLKAMGEETVVG 702
Query: 507 VK 512
VK
Sbjct: 703 VK 704
>SB_54795| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1220
Score = 31.9 bits (69), Expect = 0.33
Identities = 15/49 (30%), Positives = 20/49 (40%)
Frame = +1
Query: 46 TQQWVTSKTHTSRPETPGPQPPSPCNVRPCVKTVSLC*RVGGARLLKCP 192
T W + P P P PP PC+ T + GG+ +KCP
Sbjct: 131 TDAWRRRRRRNPPPPPPPPSPPPPCHPPALPSTYRWYNQWGGSFNVKCP 179
>SB_14043| Best HMM Match : Extensin_1 (HMM E-Value=0.75)
Length = 568
Score = 30.3 bits (65), Expect = 1.0
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 13 HISFLTVVKFKTQQWVTSKTHTSRPETPGPQPPSPCNVRPC 135
H L K KT + T+K +T++P T P+ P +PC
Sbjct: 92 HTIKLYTTKPKTTKPHTNKPYTTKPRTTKPRTTKPHTTKPC 132
Score = 28.7 bits (61), Expect = 3.1
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 61 TSKTHTSRPETPGPQPPSPCNVRPCVKTVSL 153
T+K HT++P T P P N+ P + + +L
Sbjct: 168 TTKPHTTKPHTTKPHTTKPHNIDPTLPSPTL 198
Score = 27.5 bits (58), Expect = 7.1
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +1
Query: 61 TSKTHTSRPETPGPQPPSPCNVRP 132
T+K HT++P T PQ P +P
Sbjct: 68 TTKPHTTKPRTTKPQTTKPHTTKP 91
Score = 27.5 bits (58), Expect = 7.1
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +1
Query: 46 TQQWVTSKTHTSRPETPGPQPPSPCNVRP 132
T + T+K T++P T P PC +P
Sbjct: 108 TNKPYTTKPRTTKPRTTKPHTTKPCTTKP 136
>SB_6893| Best HMM Match : PPV_E2_C (HMM E-Value=0.94)
Length = 1058
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +1
Query: 28 TVVKFKTQQWVTSKTHTSRPETPGPQPPSPCNVRP 132
+VV + VT K T +P TP P P P RP
Sbjct: 758 SVVAMPAARPVTPKPVTPKPVTPKPVTPKPVTTRP 792
>SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1671
Score = 28.7 bits (61), Expect = 3.1
Identities = 16/43 (37%), Positives = 18/43 (41%)
Frame = +3
Query: 252 NGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNG 380
NG Y CP N D + EDY + D YLT D G
Sbjct: 400 NGHTYHMTCPGQTNFDPAKKRCEDYDCSG-RDVAYLTDQNDGG 441
>SB_53582| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 393
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 49 QQWVTSKTHTSRPETPGPQPPSPCNVRPCVKT 144
+Q V S P P P PP+PC + PC +T
Sbjct: 126 EQHVVSHVMHPAPPPPPPPPPAPC-MPPCHQT 156
>SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42)
Length = 382
Score = 27.9 bits (59), Expect = 5.4
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = +1
Query: 64 SKTHTSRPETPGPQPPSPCNV 126
++T T++PET P+PP+P +
Sbjct: 165 TETTTTKPETKPPKPPAPSTI 185
>SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13)
Length = 492
Score = 27.9 bits (59), Expect = 5.4
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = -3
Query: 487 PQDFSTVHNNSLPLLKSVRNCVPRSPSGILRSSRRSPLSAIRVR 356
P+ S V + +LP+ V C+P SPS I RS P VR
Sbjct: 253 PRQISNVRSLTLPVRYQVIGCLP-SPSDIKRSVPYPPRQISNVR 295
>SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1438
Score = 27.9 bits (59), Expect = 5.4
Identities = 18/74 (24%), Positives = 32/74 (43%)
Frame = +3
Query: 279 PSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGDLGTQLRTDFNSGKE 458
P + + V + +++ D + ADN + RE+ + +L ++ T + G
Sbjct: 284 PESDGIRVDETENGEHEAVDELPEDKPDTEADNYEQREETPTKEDELKSECTTSDSEGTP 343
Query: 459 LLCTVLKSCGEECV 500
T KS GEE V
Sbjct: 344 SAATYGKSDGEENV 357
>SB_26376| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1018
Score = 27.5 bits (58), Expect = 7.1
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +1
Query: 64 SKTHTSRPETPGPQPPSP 117
++T T +P TP P PP+P
Sbjct: 288 TRTPTPKPRTPTPSPPTP 305
>SB_16428| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1005
Score = 27.5 bits (58), Expect = 7.1
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +1
Query: 79 SRPETPGPQPPSPCNVRP 132
+RP TPG +PP P N P
Sbjct: 166 TRPTTPGMRPPEPINDAP 183
>SB_2412| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 589
Score = 27.5 bits (58), Expect = 7.1
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +1
Query: 46 TQQWVTSKTHTSRPETPGPQPP-SPCNVRPCVKTVSL 153
T + +K HTS TPG P SP + P T SL
Sbjct: 262 TPEMAVNKRHTSVSHTPGGVVPFSPASFSPAAATPSL 298
>SB_50591| Best HMM Match : DUF1045 (HMM E-Value=9.2)
Length = 366
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/37 (35%), Positives = 15/37 (40%)
Frame = +1
Query: 7 VGHISFLTVVKFKTQQWVTSKTHTSRPETPGPQPPSP 117
VG ++L V WV K R T P PP P
Sbjct: 322 VGFRNYLDHVVSSIDSWVQEKERAKREATRTPTPPPP 358
>SB_13097| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 607
Score = 27.1 bits (57), Expect = 9.4
Identities = 18/44 (40%), Positives = 22/44 (50%)
Frame = -3
Query: 499 THSSPQDFSTVHNNSLPLLKSVRNCVPRSPSGILRSSRRSPLSA 368
T S PQ+ S HN SL + N S SGI +SS P S+
Sbjct: 196 TSSVPQNSSLGHNTSLVTISRASNTF--SISGIPQSSASGPYSS 237
>SB_42643| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 557
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = -1
Query: 363 GSGSHHPRYQSVGSLRASRGVRPC-CVWRDRYL 268
G+GS HP Y +V V PC C W+ + L
Sbjct: 517 GAGSPHPHYHAVQGANGQYSV-PCNCTWQPQDL 548
>SB_19567| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1383
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -1
Query: 342 RYQSVGSLRASRGVRPCCVWRDR 274
RY V +R S G++ C V+RDR
Sbjct: 359 RYTGVSGIRGSFGLQGCPVYRDR 381
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,607,117
Number of Sequences: 59808
Number of extensions: 426912
Number of successful extensions: 1347
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1334
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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