Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0630
(522 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49967-1|CAA90247.1| 161|Caenorhabditis elegans Hypothetical pr... 193 6e-50
Z27079-13|CAA81597.2| 195|Caenorhabditis elegans Hypothetical p... 185 2e-47
CU457743-2|CAM36365.1| 695|Caenorhabditis elegans Hypothetical ... 30 0.87
AY204179-1|AAO39183.1| 486|Caenorhabditis elegans nuclear recep... 30 0.87
AF332209-1|AAK17980.1| 350|Caenorhabditis elegans nuclear recep... 30 0.87
AF078783-3|AAN63404.1| 504|Caenorhabditis elegans Nuclear hormo... 30 0.87
AF078783-2|AAK82901.1| 486|Caenorhabditis elegans Nuclear hormo... 30 0.87
AF003386-14|AAK82896.1| 811|Caenorhabditis elegans Hypothetical... 29 1.5
Z74031-2|CAA98454.2| 568|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z92833-2|CAB07379.1| 891|Caenorhabditis elegans Hypothetical pr... 28 4.7
U40958-5|AAA81764.1| 654|Caenorhabditis elegans Hypothetical pr... 28 4.7
AF025465-6|AAB71030.1| 299|Caenorhabditis elegans Hypothetical ... 28 4.7
U80445-11|AAB37801.2| 479|Caenorhabditis elegans Hypothetical p... 27 6.2
U13875-4|AAK67215.1| 1510|Caenorhabditis elegans Set (trithorax/... 27 6.2
U13875-3|AAK67214.1| 1507|Caenorhabditis elegans Set (trithorax/... 27 6.2
U39648-3|AAM15603.1| 434|Caenorhabditis elegans Hypothetical pr... 27 8.1
AF106576-1|AAC78177.2| 664|Caenorhabditis elegans Hypothetical ... 27 8.1
>Z49967-1|CAA90247.1| 161|Caenorhabditis elegans Hypothetical
protein F54C9.1 protein.
Length = 161
Score = 193 bits (471), Expect = 6e-50
Identities = 94/154 (61%), Positives = 116/154 (75%), Gaps = 2/154 (1%)
Frame = +3
Query: 66 EDTHFETGDSGASATFPMQCSALRKNGFVMLKGRGCKIVEMSTSKTGKHGHAKVHLVGID 245
+D HF TGDSGA+ATFP QCSALRKN VM+KGR CKIVEMSTSKTGKHGHAKVH+V ID
Sbjct: 7 DDEHFHTGDSGAAATFPKQCSALRKNEHVMIKGRPCKIVEMSTSKTGKHGHAKVHMVAID 66
Query: 246 IFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLM-ADNGDLREDLKIPDGDLG 422
IF KK EDICPSTHNMDVP VKR +Y L I DDGY +LM ++ + ++DLK+PD +LG
Sbjct: 67 IFTSKKLEDICPSTHNMDVPVVKRREYLLMAI-DDGYCSLMDPESCEQKDDLKLPDTELG 125
Query: 423 TQLRTDFNSGK-ELLCTVLKSCGEECVIPVKANT 521
Q+R + + +L V+ + GEE ++ K +T
Sbjct: 126 QQIRDAYEKDEGSVLVQVVSAIGEEAILGWKVST 159
>Z27079-13|CAA81597.2| 195|Caenorhabditis elegans Hypothetical
protein T05G5.10 protein.
Length = 195
Score = 185 bits (450), Expect = 2e-47
Identities = 88/154 (57%), Positives = 116/154 (75%), Gaps = 2/154 (1%)
Frame = +3
Query: 66 EDTHFETGDSGASATFPMQCSALRKNGFVMLKGRGCKIVEMSTSKTGKHGHAKVHLVGID 245
++ F++ +SGA+ATFP QCSALRKN VM++GR CKIVEMSTSKTGKHGHAKVH+V ID
Sbjct: 41 DEEQFDSAESGAAATFPKQCSALRKNEHVMIRGRPCKIVEMSTSKTGKHGHAKVHMVAID 100
Query: 246 IFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLM-ADNGDLREDLKIPDGDLG 422
IF KK EDICPSTHNMDVP VKR +Y L I +DG+ +LM ++ +L++DLK+P+GDLG
Sbjct: 101 IFTTKKLEDICPSTHNMDVPVVKRREYILMSI-EDGFCSLMDPESCELKDDLKMPEGDLG 159
Query: 423 TQLRTDFNSGK-ELLCTVLKSCGEECVIPVKANT 521
+R + +L V+ +CGEE ++ K +T
Sbjct: 160 NTIREALEKDEGSVLVQVVAACGEEAILGYKIST 193
>CU457743-2|CAM36365.1| 695|Caenorhabditis elegans Hypothetical
protein K09E10.2 protein.
Length = 695
Score = 30.3 bits (65), Expect = 0.87
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Frame = +3
Query: 291 NMDVPHVKREDYQLTDI--SDDGYLTLMADNGDLREDLKIPDGDLGTQLRTD-FNSGKEL 461
N +P +K++ Y L ++ GY+ + GDL+ KI D LR D + G+
Sbjct: 573 NKFIPFIKKKLYILDSFPRANSGYIARVP--GDLKNGKKIEDISKA-MLRPDGYERGRLR 629
Query: 462 LCTVLKSCGEEC 497
++K CG++C
Sbjct: 630 HAALVKECGDKC 641
>AY204179-1|AAO39183.1| 486|Caenorhabditis elegans nuclear receptor
NHR-80 protein.
Length = 486
Score = 30.3 bits (65), Expect = 0.87
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Frame = +1
Query: 31 VVKFKTQQWVTSKTH-----TSRPETPGPQPPSPCNVRPCVKTV 147
V+K T + ++S T T+ TPGP P +PC+ P V T+
Sbjct: 149 VIKTPTPRKISSSTSFSASTTTNYSTPGPSPMAPCSAGPDVLTL 192
>AF332209-1|AAK17980.1| 350|Caenorhabditis elegans nuclear receptor
NHR-80 protein.
Length = 350
Score = 30.3 bits (65), Expect = 0.87
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Frame = +1
Query: 31 VVKFKTQQWVTSKTH-----TSRPETPGPQPPSPCNVRPCVKTV 147
V+K T + ++S T T+ TPGP P +PC+ P V T+
Sbjct: 13 VIKTPTPRKISSSTSFSASTTTNYSTPGPSPMAPCSAGPDVLTL 56
>AF078783-3|AAN63404.1| 504|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 80, isoform b protein.
Length = 504
Score = 30.3 bits (65), Expect = 0.87
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Frame = +1
Query: 31 VVKFKTQQWVTSKTH-----TSRPETPGPQPPSPCNVRPCVKTV 147
V+K T + ++S T T+ TPGP P +PC+ P V T+
Sbjct: 167 VIKTPTPRKISSSTSFSASTTTNYSTPGPSPMAPCSAGPDVLTL 210
>AF078783-2|AAK82901.1| 486|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 80, isoform a protein.
Length = 486
Score = 30.3 bits (65), Expect = 0.87
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Frame = +1
Query: 31 VVKFKTQQWVTSKTH-----TSRPETPGPQPPSPCNVRPCVKTV 147
V+K T + ++S T T+ TPGP P +PC+ P V T+
Sbjct: 149 VIKTPTPRKISSSTSFSASTTTNYSTPGPSPMAPCSAGPDVLTL 192
>AF003386-14|AAK82896.1| 811|Caenorhabditis elegans Hypothetical
protein F59E12.1 protein.
Length = 811
Score = 29.5 bits (63), Expect = 1.5
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +1
Query: 61 TSKTHTSRPETPGPQPPSPCNVRP 132
T K T R E+P P PP P RP
Sbjct: 358 TEKPETPRAESPDPLPPPPSKKRP 381
>Z74031-2|CAA98454.2| 568|Caenorhabditis elegans Hypothetical
protein F32D8.2 protein.
Length = 568
Score = 28.7 bits (61), Expect = 2.7
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
Frame = +3
Query: 246 IFNGKKYEDICPSTHNMDVPHVKREDYQLT------DISDDGYLTLMADN-GDLREDLK 401
IF + ED+ T + H+ R + ++ D+S DGYLTL + N DL D++
Sbjct: 74 IFFPNEDEDVFGLTPDKSKQHIVRGECKINELNEKVDLSSDGYLTLRSKNTNDLPSDIR 132
>Z92833-2|CAB07379.1| 891|Caenorhabditis elegans Hypothetical
protein F38A6.2 protein.
Length = 891
Score = 27.9 bits (59), Expect = 4.7
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = -3
Query: 493 SSPQDFSTVHNNSLPLLKSVRNCVPRSP--SGILRSSRRS 380
+S + ST H S P L S+ + + RSP S ILR + R+
Sbjct: 198 NSVRRLSTTHRQSSPSLLSLCSVISRSPSTSSILRKNNRT 237
>U40958-5|AAA81764.1| 654|Caenorhabditis elegans Hypothetical
protein F09F9.4 protein.
Length = 654
Score = 27.9 bits (59), Expect = 4.7
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = -3
Query: 148 KPFLRRAEHCMGKVAEAPESPVSKCVSSMSP 56
+P +R+++C G + E E ++KC +M P
Sbjct: 345 EPVPKRSKYCDGPLIETQECTLTKCPEAMMP 375
>AF025465-6|AAB71030.1| 299|Caenorhabditis elegans Hypothetical
protein K02E7.10 protein.
Length = 299
Score = 27.9 bits (59), Expect = 4.7
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = -2
Query: 257 TIEDINPNQVNFSVAVLSGFGCGHFNNLAPPTLQHNET 144
T D+ PN+ ++ A ++ FG G+F +PP+ H +T
Sbjct: 190 TYIDVYPNE-EWARAHITTFGTGYFRMRSPPSFFHYKT 226
>U80445-11|AAB37801.2| 479|Caenorhabditis elegans Hypothetical
protein C50F2.8 protein.
Length = 479
Score = 27.5 bits (58), Expect = 6.2
Identities = 23/78 (29%), Positives = 36/78 (46%)
Frame = -2
Query: 413 TIRDFEVLTQVTVVSHQGQVAIIRDISQLVVFALHVGYVHVVCGGTDIFILFTIEDINPN 234
T D LTQV V H GQ+ ++ I++ + L G V G D++ IE++
Sbjct: 137 TTVDAGQLTQVEVEKHGGQL-VVTKINEKSNYDLKPGDVITQVDGKDVYFRADIENLK-G 194
Query: 233 QVNFSVAVLSGFGCGHFN 180
+V +V +G C N
Sbjct: 195 KVELTVEP-AGIHCAPAN 211
>U13875-4|AAK67215.1| 1510|Caenorhabditis elegans Set
(trithorax/polycomb) domaincontaining protein 2, isoform
c protein.
Length = 1510
Score = 27.5 bits (58), Expect = 6.2
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -3
Query: 508 TGMTHSSPQDFSTVHNNSLPLLKSVRNCVPRSPSG 404
T + S+ ++ S+ H NS+P LKS P P G
Sbjct: 527 TTSSSSTRRELSSTHTNSVPNLKSHETPPPPPPKG 561
>U13875-3|AAK67214.1| 1507|Caenorhabditis elegans Set
(trithorax/polycomb) domaincontaining protein 2, isoform
a protein.
Length = 1507
Score = 27.5 bits (58), Expect = 6.2
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -3
Query: 508 TGMTHSSPQDFSTVHNNSLPLLKSVRNCVPRSPSG 404
T + S+ ++ S+ H NS+P LKS P P G
Sbjct: 527 TTSSSSTRRELSSTHTNSVPNLKSHETPPPPPPKG 561
>U39648-3|AAM15603.1| 434|Caenorhabditis elegans Hypothetical
protein T13C5.2 protein.
Length = 434
Score = 27.1 bits (57), Expect = 8.1
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = +1
Query: 46 TQQWVTSKTHTSRPETPGPQPPSPCNVRPCVKTVSLC*RVGGARLLK-CPHPKPESTATL 222
T T+ T + T +PP PCN P V + C G LL+ CP + A +
Sbjct: 30 TTTTTTTTTTVATTTTTVTEPPFPCNACPKVYD-NTCQGFGIPNLLQWCP---TAAEAGI 85
Query: 223 KFTWLGLISSM 255
++T LGLI+++
Sbjct: 86 EYT-LGLITAI 95
>AF106576-1|AAC78177.2| 664|Caenorhabditis elegans Hypothetical
protein W07E6.1 protein.
Length = 664
Score = 27.1 bits (57), Expect = 8.1
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Frame = +3
Query: 258 KKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLM---ADNGDLREDLKIPDGDLGTQ 428
KK + H + P + E QL D +DG L +D+ DLR+D D D G
Sbjct: 45 KKVKKSAKKAHEEE-PIEQVEKLQLIDDDEDGLEGLSFPGSDDEDLRDDYSDDDSDAGDH 103
Query: 429 L 431
L
Sbjct: 104 L 104
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,410,882
Number of Sequences: 27780
Number of extensions: 304699
Number of successful extensions: 998
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 980
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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