Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0629
         (663 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A3IC18 Cluster: ATP-dependent nuclease, subunit A; n=1;...    33   4.6  
UniRef50_Q7TDB5 Cluster: VP2; n=1; Cryphonectria parasitica myco...    33   6.1  

>UniRef50_A3IC18 Cluster: ATP-dependent nuclease, subunit A; n=1;
           Bacillus sp. B14905|Rep: ATP-dependent nuclease, subunit
           A - Bacillus sp. B14905
          Length = 1238

 Score = 33.5 bits (73), Expect = 4.6
 Identities = 17/65 (26%), Positives = 30/65 (46%)
 Frame = +1

Query: 214 FPFDRNSPEHQKLIVVFYGGAGIHSSPAKWMKEA*RA*FHALMRSN*DDIGLQHQCRYPL 393
           F  DR+    + LI   Y  + +H+ P +W++   +A +        DD+ L H  +  +
Sbjct: 175 FTSDRDDQAIETLISKLYDTSRVHAEPQRWLRSLPKA-YELAEEVTIDDLELSHYVKLTV 233

Query: 394 RRGLE 408
           R  LE
Sbjct: 234 RHSLE 238


>UniRef50_Q7TDB5 Cluster: VP2; n=1; Cryphonectria parasitica
           mycoreovirus-1 (9B21)|Rep: VP2 - Cryphonectria
           parasitica mycoreovirus-1 (9B21)
          Length = 1238

 Score = 33.1 bits (72), Expect = 6.1
 Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
 Frame = +1

Query: 19  EFRFIIFNEPSIKRLLSPSYALLLNCSIVSRNEFKGY*SYQ*KERELHGWGKIIQPISL- 195
           +F     +E S  R     Y  LLN  +V+RNE  GY +      +   +     P+ L 
Sbjct: 338 QFHSNFLDEVSSLRFSHVQYIRLLNSLVVNRNEITGYTTL----LQFREYSAAHVPLQLS 393

Query: 196 AMNSSVFPFDRNSPEHQKLIV 258
           A++ S FP+DR + +  + +V
Sbjct: 394 ALDYSTFPYDRRTSDCLRFMV 414


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 686,413,614
Number of Sequences: 1657284
Number of extensions: 14278060
Number of successful extensions: 32268
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 31378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32264
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 50413227838
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)