Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0629
         (663 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    29   0.60 
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    28   1.0  
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    27   2.4  
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe...    27   2.4  
SPBC17D11.03c |||conserved fungal protein|Schizosaccharomyces po...    26   4.2  
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    25   7.4  
SPAC23G3.05c |||regulator of G-protein signaling |Schizosaccharo...    25   9.7  
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII...    25   9.7  

>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1234

 Score = 29.1 bits (62), Expect = 0.60
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = +2

Query: 68   VLHTLYYSTALLLAETSLRATEATNRRNVSFTGGGK 175
            +L  L Y+TA L+ ET L+ T   +R NVS +  GK
Sbjct: 992  LLRHLTYATAKLITETFLQITPTQSRSNVSSSLIGK 1027


>SPAC926.09c |fas1||fatty acid synthase beta subunit
            Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = -3

Query: 403  DLYAVDSDIDAGVQCRLNLIASAHGTTLSRPLSSTLPGMNEYQLHHKIRR 254
            DL AV  +    V      +A+ H T ++ P    L G+NE  + H I++
Sbjct: 1041 DLAAVVGEDVGRVAILQGPMAAKHSTKVNEPAKELLDGINETHIQHFIKK 1090


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +2

Query: 323 RSSMR*CDQIKTTLDSSINVAIHCVEVWKEWRNIVQSK 436
           RS M   D  K  + +SIN A  C++V++E  N  +++
Sbjct: 405 RSEMNDVDIQKRDIQNSINAAKSCLDVYREQLNTERAR 442


>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 716

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 14/55 (25%), Positives = 28/55 (50%)
 Frame = +2

Query: 20  NFVSLFSMNHQSNDYLVLHTLYYSTALLLAETSLRATEATNRRNVSFTGGGKSFS 184
           NF+ L S+  Q +D+L++ +L+   +L  A+ S+     +N         G+ F+
Sbjct: 103 NFLELSSLLAQLDDHLIMRSLFVGYSLTSADFSIWGALKSNNMAAGAVRTGQYFN 157


>SPBC17D11.03c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 213

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = -3

Query: 421 VPPFFPDLY--AVDSDIDAGVQCRLNLIASAHGTTLSRPLSS 302
           +PP FPD +  A D+DID G + ++      +G    R L S
Sbjct: 82  IPPPFPDEFARAADADIDTGKRGKI-YFEKTYGKVTQRVLRS 122


>SPAC6C3.06c |||P-type ATPase, calcium
           transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 11  TVKNFVSLFSMNHQSNDYLVLHTLYYSTAL 100
           +V +F   F++N+Q     V HTL+ +T L
Sbjct: 252 SVHHFYGTFTLNNQKRPISVDHTLWANTVL 281


>SPAC23G3.05c |||regulator of G-protein signaling
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 343

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 651 AIEQIINHKFQKRQNELTSRGGFCI 577
           A  + +NHKF+   N LT  G F I
Sbjct: 214 AYYRFLNHKFKHNLNPLTCTGRFII 238


>SPAC144.09c |sfc2||RNA polymerase III transcription factor
           TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -3

Query: 193 EKWAE*FSPTREAHVPS 143
           EKW++  +  REAHVPS
Sbjct: 189 EKWSQLQNHIREAHVPS 205


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,834,737
Number of Sequences: 5004
Number of extensions: 59461
Number of successful extensions: 144
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)