Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0629
         (663 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0111 - 825369-825428,825778-826380,826467-827267,827716-82...    29   4.4  
11_01_0758 + 6362500-6363233,6363709-6365500                           28   5.8  
10_07_0070 + 12589511-12589805,12590208-12590423,12591841-125919...    28   5.8  
04_04_0655 + 26974366-26974398,26974480-26974899,26975023-26975859     28   7.6  

>02_01_0111 -
           825369-825428,825778-826380,826467-827267,827716-827766
          Length = 504

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = -1

Query: 612 QNELTSRGGFCITLEFKWSSDRMVQLGLGCYRSL*RHNLNTSLLLASCSSVRVVTFTEHF 433
           +NE  + G   +     +S D+M+Q  +  Y    R+ L  + L+   ++ +      H+
Sbjct: 330 ENEQLAFGPGLVVPGIYYSDDKMLQCRVFAYADTQRYRLGPNYLMLPVNAPKCAHHNNHY 389

Query: 432 DWTM-FLH 412
           D  M F+H
Sbjct: 390 DGAMNFMH 397


>11_01_0758 + 6362500-6363233,6363709-6365500
          Length = 841

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +2

Query: 524 QPNPSWTMRSLDHLNSKVIQKPPRLVNSF 610
           +PNPS  + SLD+LN  V+  PP  + +F
Sbjct: 644 EPNPSGKISSLDNLN--VLSSPPIFLQTF 670


>10_07_0070 +
           12589511-12589805,12590208-12590423,12591841-12591992,
           12592079-12592355,12592889-12593178
          Length = 409

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = -3

Query: 409 FPDLYAVDSDIDAGVQCRLNLIASAHGTTLSRPL 308
           FP   A D D D G   R N +A  H   L+R L
Sbjct: 249 FPAGSAADYDPDTGCNARFNKLAEVHNRELTRML 282


>04_04_0655 + 26974366-26974398,26974480-26974899,26975023-26975859
          Length = 429

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +2

Query: 608 FWRF*NLWFIIC 643
           FW F NLWF++C
Sbjct: 29  FWNFGNLWFLLC 40


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,613,091
Number of Sequences: 37544
Number of extensions: 405998
Number of successful extensions: 925
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)