Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0629
         (663 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4695| Best HMM Match : SAM_1 (HMM E-Value=0.012)                    29   4.5  
SB_55665| Best HMM Match : HMA (HMM E-Value=4.8)                       28   5.9  
SB_4115| Best HMM Match : Homeobox (HMM E-Value=9.4e-08)               28   5.9  
SB_32486| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.8  

>SB_4695| Best HMM Match : SAM_1 (HMM E-Value=0.012)
          Length = 1348

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 5/87 (5%)
 Frame = -3

Query: 520 PKPMTSQFEYQPSPCVVFLSAGRDLYGAF*LDYVPPFFPDLYAVDSDIDAGVQCR-LNLI 344
           PK   S +E  P P     SA  D+      +  PP  P L A +   + G + R ++  
Sbjct: 323 PKTRPSVYEIAPRPVPAEPSAFSDVQRPSVYEIAPPPRPRLPAREPVAEGGQEGRPISGE 382

Query: 343 ASAHGTTLS----RPLSSTLPGMNEYQ 275
              HG+ +     RP   T P MNEYQ
Sbjct: 383 GPRHGSLIKEEPPRPPQKTRP-MNEYQ 408


>SB_55665| Best HMM Match : HMA (HMM E-Value=4.8)
          Length = 250

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -1

Query: 507 RHNLNTSLLLASCSSVRVVTFTEHFDWTMFLHSFQTSTQWIAT 379
           +HN NT L +  C S    T T+H+ +++  +  QT  Q+  T
Sbjct: 153 KHNHNTVLHIQPCISGTNTTTTQHYTYSL-AYQVQTQPQYSTT 194


>SB_4115| Best HMM Match : Homeobox (HMM E-Value=9.4e-08)
          Length = 267

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 373 AGVQCRLNLIASAHGTTLSRPLSSTLPGMNEYQLHHK 263
           A      +L  S   T L +PL+ +LP  N +Q HH+
Sbjct: 163 AATSLEASLSQSVTATPLYQPLTQSLPSNNLHQSHHE 199


>SB_32486| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 914

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 10/37 (27%), Positives = 23/37 (62%)
 Frame = +2

Query: 344 DQIKTTLDSSINVAIHCVEVWKEWRNIVQSKCSVKVT 454
           D +K  LD+ +N+ +  ++   +W+NI  S  ++++T
Sbjct: 194 DLLKNLLDARVNIIVLFIDDISDWKNIQPSANNLEMT 230


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,845,108
Number of Sequences: 59808
Number of extensions: 445334
Number of successful extensions: 868
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)